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IMGVR_UViG_3300001322_000010-3300001322-A2665W6_1005949

Arc-Vir

IMGVR_UViG_3300001322_000010-3300001322-A2665W6_1005949

Quality

77.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-65
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 66.0 5.22e-01 95.1% 52.8%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.73 44.0 3.41e-01 96.7% 29.5%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.69 44.0 3.52e-01 98.4% 32.5%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 58.0 4.57e-01 100.0% 55.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.39e-01 93.4% 53.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 4.60e-01 90.2% 100.0%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.64 46.0 4.25e-01 83.6% 58.7%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 32.0 2.89e-01 83.6% 32.6%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 46.0 4.21e-01 78.7% 67.1%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.64e-01 75.4% 79.8%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.81e-01 82.0% 49.0%
2h3gX01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 44.0 3.98e-01 80.3% 95.5%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 44.0 3.70e-01 80.3% 47.7%
2xf4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 40.0 2.84e-01 70.5% 93.8%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 45.0 3.54e-01 82.0% 60.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.86e-01 90.2% 48.8%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 44.0 3.67e-01 83.6% 78.8%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 42.0 3.53e-01 77.0% 48.6%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 43.0 3.57e-01 83.6% 79.7%
1rxxC01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.58 46.0 2.93e-01 88.5% 47.7%
2kw4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 44.0 3.38e-01 85.2% 72.1%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 40.0 3.32e-01 77.0% 38.7%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.57 49.0 3.67e-01 100.0% 39.6%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.57 48.0 3.17e-01 100.0% 69.7%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 42.0 3.66e-01 83.6% 83.7%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.47e-01 78.7% 45.6%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 40.0 3.61e-01 78.7% 58.2%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 34.0 3.05e-01 85.2% 42.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 44.0 3.53e-01 93.4% 40.0%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.56 44.0 3.64e-01 85.2% 86.1%
2n6eA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.55 41.0 3.51e-01 85.2% 50.0%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.35e-01 90.2% 49.7%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.55 39.0 3.08e-01 72.1% 78.6%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.54 43.0 3.01e-01 91.8% 74.7%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 37.0 3.25e-01 72.1% 95.8%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 38.0 3.26e-01 73.8% 92.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 41.0 4.00e-01 88.5% 80.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 3.38e-01 78.7% 60.9%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.48e-01 85.2% 53.8%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.16e-01 82.0% 77.5%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 36.0 3.09e-01 73.8% 87.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 3.48e-01 85.2% 77.8%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 46.0 3.32e-01 98.4% 74.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3547439 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.75 37.0 2.34e-01 80.3% 10.9%
4951189 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.75 54.0 5.88e-01 77.0% 94.0%
4024504 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 54.0 4.59e-01 80.3% 48.0%
4019913 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.73 51.0 4.20e-01 83.6% 41.7%
3577440 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.71 55.0 4.44e-01 83.6% 53.0%
3968468 4152.2.1.0 a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.70 48.0 4.52e-01 72.1% 73.3%
3619778 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 60.0 3.91e-01 100.0% 62.9%
4028997 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 54.0 4.77e-01 86.9% 67.8%
4588452 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.68 48.0 4.58e-01 78.7% 64.3%
3486812 101.1.12.3 alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.68 54.0 4.06e-01 88.5% 44.5%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.68 49.0 4.46e-01 78.7% 70.6%
3623534 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 52.0 4.63e-01 85.2% 61.1%
3712208 2484.8.1.0 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.67 50.0 3.21e-01 80.3% 88.4%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 49.0 3.76e-01 80.3% 37.2%
3917645 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 48.0 3.91e-01 78.7% 66.7%
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.66 45.0 4.53e-01 70.5% 78.3%
3629460 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 58.0 3.77e-01 100.0% 61.8%
3929231 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 50.0 3.96e-01 83.6% 43.8%
4674129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.73e-01 96.7% 61.0%
3336295 7528.1.1.4 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_III 0.65 44.0 3.18e-01 72.1% 93.2%
3721377 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 48.0 3.87e-01 83.6% 40.8%
3987365 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.64 47.0 4.33e-01 78.7% 75.0%
4131948 220.1.1.186 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 0.64 46.0 3.98e-01 78.7% 86.0%
3217758 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.64 51.0 3.36e-01 90.2% 35.3%
3266673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 55.0 3.45e-01 100.0% 69.7%
3226939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.34e-01 90.2% 56.0%
3938498 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.62 52.0 4.48e-01 93.4% 85.7%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.62 49.0 4.04e-01 85.2% 48.2%
943 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.62 47.0 4.02e-01 83.6% 50.0%
4411025 284.1.3.3 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.62 43.0 3.99e-01 73.8% 80.0%
3791851 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.56e-01 82.0% 62.8%
3328840 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.62 43.0 3.92e-01 73.8% 80.0%
4965187 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 45.0 4.44e-01 78.7% 78.5%
5039031 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 46.0 3.88e-01 83.6% 49.1%
3691567 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 46.0 3.76e-01 83.6% 82.3%
3241305 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.61 46.0 3.61e-01 85.2% 36.4%
3496857 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.85e-01 82.0% 48.6%
4027128 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.60 45.0 4.23e-01 83.6% 80.8%
3739857 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 45.0 3.75e-01 83.6% 85.2%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 40.0 2.54e-01 70.5% 14.8%
3321360 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.59 45.0 4.33e-01 90.2% 84.0%
3719807 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 51.0 3.99e-01 100.0% 49.3%
3411831 922.1.1.40 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1, TSP1_ADAMTS 0.59 40.0 3.23e-01 72.1% 44.8%
3699531 220.1.1.157 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29715 0.58 46.0 3.72e-01 90.2% 46.9%
3786015 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 49.0 2.84e-01 100.0% 46.1%
5022543 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.58 47.0 2.77e-01 90.2% 14.9%
3612106 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 53.0 4.89e-01 98.4% 88.0%
3257603 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 43.0 3.59e-01 83.6% 76.7%
4398495 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.57 49.0 2.82e-01 100.0% 36.8%
4639619 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 3.54e-01 90.2% 77.9%
4982958 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.57 45.0 3.81e-01 85.2% 87.0%
4890873 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.57 46.0 3.63e-01 90.2% 66.9%
3817220 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 49.0 3.13e-01 96.7% 68.5%
3744517 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 44.0 3.57e-01 85.2% 79.2%
3473908 220.1.1.157 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29715 0.56 43.0 3.31e-01 90.2% 33.9%
3444970 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.56 40.0 3.27e-01 78.7% 36.9%
3475648 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 48.0 2.82e-01 93.4% 44.5%
3289183 3837.1.1.3 alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF7873 0.56 51.0 3.54e-01 98.4% 44.4%
3214889 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 41.0 3.99e-01 80.3% 74.3%
3573645 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.55 45.0 2.96e-01 91.8% 60.7%
3315568 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 41.0 3.96e-01 80.3% 77.1%
4981192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 41.0 2.84e-01 91.8% 75.3%
3626212 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 3.23e-01 91.8% 93.5%
5081581 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 42.0 3.04e-01 100.0% 63.9%
4147969 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 46.0 4.11e-01 100.0% 89.4%
3492079 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 38.0 3.37e-01 86.9% 70.1%