←Back to structures
IMGVR_UViG_3300001344_000070-3300001344-JGI20152J14361_100014985
Arc-VirIMGVR_UViG_3300001344_000070-3300001344-JGI20152J14361_100014985
Identity
- Kingdom:
- archaea
Quality
53.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 54-94
D2
medium
residues 311-397
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 58.0 | 5.33e-01 | 98.9% | 59.5% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.79 | 50.0 | 5.50e-01 | 97.7% | 78.9% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.78 | 44.0 | 3.76e-01 | 72.4% | 37.6% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 55.0 | 6.00e-01 | 98.9% | 90.1% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.68 | 39.0 | 3.31e-01 | 78.2% | 36.3% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 56.0 | 4.87e-01 | 98.9% | 79.5% |
| 4nx9A01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.61 | 56.0 | 4.53e-01 | 98.9% | 93.5% |
| 2o0yB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 49.0 | 3.92e-01 | 89.7% | 92.1% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 49.0 | 5.05e-01 | 97.7% | 95.1% |
| 3obfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 47.0 | 3.71e-01 | 83.9% | 96.6% |
| 6d0aA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 38.0 | 3.50e-01 | 77.0% | 49.6% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 54.0 | 4.98e-01 | 98.9% | 80.7% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 45.0 | 3.93e-01 | 82.8% | 80.5% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 34.0 | 3.64e-01 | 73.6% | 70.3% |
| 5j6bA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.55 | 35.0 | 2.73e-01 | 81.6% | 29.5% |
| 4i3vA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.55 | 35.0 | 2.66e-01 | 82.8% | 28.3% |
| 5ly3A02 | 3.30.420.570 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 46.0 | 3.51e-01 | 100.0% | 68.8% |
| 2drvA00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.53 | 48.0 | 3.66e-01 | 97.7% | 46.6% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 37.0 | 3.34e-01 | 79.3% | 51.2% |
| 5jqyA02 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.51 | 37.0 | 2.90e-01 | 86.2% | 34.7% |
| 1tljB00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.50 | 42.0 | 3.27e-01 | 90.8% | 85.6% |
| 2qycA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.81e-01 | 86.2% | 76.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3909706 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.80 | 54.0 | 5.49e-01 | 100.0% | 70.6% |
| 3954913 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.74 | 59.0 | 5.39e-01 | 98.9% | 65.2% |
| 3999274 | 5086.1.1.102 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp | 0.69 | 53.0 | 4.99e-01 | 98.9% | 67.6% |
| 4961796 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.68 | 59.0 | 5.89e-01 | 98.9% | 91.1% |
| 3726808 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.66 | 56.0 | 4.37e-01 | 97.7% | 43.9% |
| 5057599 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.65 | 46.0 | 4.22e-01 | 94.3% | 58.2% |
| 4575178 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.63 | 56.0 | 4.36e-01 | 98.9% | 45.9% |
| 4523812 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.63 | 47.0 | 3.46e-01 | 96.6% | 29.2% |
| 3234426 | 174.1.1.14 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NKAIN | 0.62 | 55.0 | 4.51e-01 | 97.7% | 96.2% |
| 4121071 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.59 | 51.0 | 4.13e-01 | 98.9% | 85.7% |
| 5081349 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.58 | 36.0 | 3.43e-01 | 83.9% | 51.4% |
| 3432156 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.58 | 32.0 | 3.85e-01 | 72.4% | 85.5% |
| 4191334 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.58 | 52.0 | 4.50e-01 | 98.9% | 70.9% |
| 5030176 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.57 | 41.0 | 3.47e-01 | 77.0% | 48.0% |
| 3961733 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.56 | 41.0 | 4.08e-01 | 81.6% | 73.3% |
| 3771989 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.56 | 51.0 | 4.39e-01 | 98.9% | 66.7% |
| 3600598 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 44.0 | 3.84e-01 | 89.7% | 100.0% |
| 3409703 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.54 | 48.0 | 4.18e-01 | 98.9% | 92.3% |
| 4791706 | 304.126.1.4 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N | 0.53 | 32.0 | 3.46e-01 | 79.3% | 70.3% |
| 3804758 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.53 | 43.0 | 2.95e-01 | 89.7% | 66.6% |
| 3932471 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 40.0 | 2.72e-01 | 81.6% | 92.4% |
| 4379604 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.52 | 36.0 | 3.47e-01 | 86.2% | 61.5% |
D3
medium
residues 424-497
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5i0fB04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 42.0 | 4.09e-01 | 81.1% | 100.0% |
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 3.75e-01 | 83.8% | 97.8% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 38.0 | 3.33e-01 | 83.8% | 66.4% |
| 4lxjA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 44.0 | 2.83e-01 | 100.0% | 68.6% |
| 3hqxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 36.0 | 3.33e-01 | 78.4% | 76.2% |
| 1vj2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 38.0 | 3.39e-01 | 83.8% | 93.9% |
| 4qtcA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 37.0 | 2.78e-01 | 79.7% | 63.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726945 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.56 | 40.0 | 3.30e-01 | 75.7% | 82.9% |
| 1933549 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.56 | 42.0 | 4.07e-01 | 81.1% | 100.0% |
| 4013782 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 44.0 | 3.09e-01 | 93.2% | 60.4% |
| 5065774 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 41.0 | 3.72e-01 | 81.1% | 95.0% |
| 3611958 | 11.1.1.105 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Coatamer_beta_C | 0.53 | 36.0 | 2.97e-01 | 71.6% | 100.0% |
| 4059345 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.52 | 36.0 | 3.56e-01 | 74.3% | 100.0% |
| 3966668 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 39.0 | 3.64e-01 | 82.4% | 100.0% |
| 134819 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 38.0 | 3.33e-01 | 83.8% | 66.4% |