←Back to structures

IMGVR_UViG_3300001368_000112-3300001368-JGI20225J14565_10021983

Arc-Vir

IMGVR_UViG_3300001368_000112-3300001368-JGI20225J14565_10021983

Identity

Kingdom:
archaea

Quality

69.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-77
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 45.0 4.03e-01 81.1% 45.3%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.70 47.0 4.29e-01 86.5% 53.1%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 46.0 4.06e-01 86.5% 48.6%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.62 55.0 3.46e-01 100.0% 47.0%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 44.0 3.44e-01 91.9% 35.8%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 49.0 3.64e-01 93.2% 56.4%
3bwnD01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 41.0 3.28e-01 97.3% 38.9%
4l4qA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.57 48.0 4.01e-01 91.9% 88.8%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.62e-01 82.4% 52.3%
5tuuA00 1.20.140.80 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP 0.56 50.0 3.97e-01 95.9% 59.7%
6s2vC02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 46.0 3.80e-01 94.6% 49.0%
3dktA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.54 46.0 3.61e-01 97.3% 46.7%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 45.0 3.16e-01 91.9% 43.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3762458 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 45.0 4.05e-01 82.4% 51.0%
4666185 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.64 49.0 3.09e-01 100.0% 14.9%
3517801 11.1.7.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like 0.62 51.0 3.73e-01 95.9% 64.0%
3670948 316.1.1.13 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.60 52.0 3.89e-01 98.6% 39.5%
4613758 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.60 42.0 3.73e-01 85.1% 49.5%
3241258 4154.1.1.1 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP 0.60 53.0 4.16e-01 95.9% 57.3%
3925480 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.59 54.0 3.28e-01 100.0% 71.3%
3837772 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 3.40e-01 90.5% 55.1%
4486052 304.48.1.39 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.59 54.0 3.42e-01 100.0% 24.1%
3171491 883.1.1.20 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.58 50.0 3.65e-01 95.9% 47.3%
3649132 109.4.1.888 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N 0.58 48.0 2.87e-01 100.0% 12.1%
4943111 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.56 48.0 4.15e-01 93.2% 62.6%
4187036 306.7.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain 0.56 45.0 3.93e-01 90.5% 58.2%
4444422 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 47.0 3.99e-01 94.6% 99.2%
4088089 304.48.1.39 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.55 48.0 3.18e-01 98.6% 50.0%
3491987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.24e-01 74.3% 100.0%
2724409 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.55 47.0 3.23e-01 97.3% 61.9%
3507104 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.54 41.0 3.16e-01 95.9% 35.9%
3185390 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 48.0 4.11e-01 100.0% 87.8%
4937882 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 42.0 3.69e-01 86.5% 61.1%
3476505 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.51 42.0 3.50e-01 91.9% 63.1%
3413287 11.1.1.796 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Shg 0.50 38.0 3.08e-01 83.8% 98.1%