←Back to structures

IMGVR_UViG_3300001446_000118-3300001446-JGI20130J15133_100131810

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300001446_000118-3300001446-JGI20130J15133_100131810 ↗
Kingdom:: archaea

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-104

PDB

Domain cluster: rep: IMGVR_UViG_3300050021_000629-3300050021-Ga0494719_017190_1185_1547__D36-114

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4uw9A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.58	45.0	4.34e-01	98.6%	73.5%
7craA02	1.20.58.1480	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	42.0	3.98e-01	82.2%	68.5%
1vb3A01	3.90.1380.10	Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain	0.56	44.0	4.30e-01	87.7%	96.3%
3h5qA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.54	34.0	3.53e-01	84.9%	67.1%
3e2dA03	1.10.1200.140	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Alkaline phosphatase, crown domain	0.53	36.0	3.89e-01	78.1%	85.2%
3w4sA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.53	43.0	3.00e-01	93.2%	69.2%
3lx7A01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.50	30.0	3.37e-01	100.0%	89.1%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4957561	6050.1.1.0 ↗	a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone	0.81	74.0	6.48e-01	100.0%	85.7%
3586672	6050.1.1.0 ↗	a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone	0.68	60.0	5.36e-01	100.0%	82.9%
3641871	1.1.5.8 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx	0.68	35.0	2.69e-01	78.1%	23.1%
4576982	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.63	46.0	3.29e-01	79.5%	26.8%
4170287	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.63	46.0	3.35e-01	79.5%	28.8%
4430275	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.60	44.0	3.21e-01	79.5%	28.8%
5005301	4040.1.1.1 ↗	alpha bundles › Fic-like › Fic-like › Fic-like › Fic	0.56	45.0	3.88e-01	86.3%	92.2%
4669156	205.1.1.0 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin	0.56	43.0	3.12e-01	84.9%	71.1%
4003130	524.1.1.1 ↗	alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC	0.56	45.0	3.64e-01	93.2%	91.6%
4966457	4040.1.1.1 ↗	alpha bundles › Fic-like › Fic-like › Fic-like › Fic	0.55	44.0	3.86e-01	87.7%	90.3%
5041478	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	40.0	3.87e-01	75.3%	92.5%
3270068	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.54	43.0	4.15e-01	100.0%	76.5%
4983906	101.1.2.554 ↗	alpha arrays › HTH › HTH › winged helix domain › PF30184	0.53	39.0	3.57e-01	100.0%	58.9%
4404896	5060.1.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39	0.52	38.0	3.29e-01	80.8%	48.7%