Back to structures

IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351944

Arc-Vir

IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351944

Quality

82.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5y6iA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.78 49.0 3.54e-01 95.1% 24.2%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.75 62.0 4.82e-01 91.8% 64.9%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.69 44.0 3.26e-01 96.7% 24.7%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 46.0 3.52e-01 72.1% 45.0%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.66 53.0 3.78e-01 90.2% 59.1%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 46.0 3.60e-01 72.1% 50.0%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 45.0 3.34e-01 72.1% 46.5%
3w20A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.65 44.0 2.96e-01 70.5% 85.0%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 44.0 3.96e-01 72.1% 59.1%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 55.0 4.57e-01 100.0% 71.8%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.65 51.0 3.59e-01 86.9% 89.7%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 55.0 4.60e-01 100.0% 76.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.64 46.0 4.33e-01 77.0% 69.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 43.0 4.25e-01 70.5% 77.3%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.64 55.0 4.29e-01 100.0% 62.4%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 44.0 3.50e-01 73.8% 50.8%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 54.0 4.36e-01 100.0% 63.0%
2f4mA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.64 53.0 3.54e-01 91.8% 32.2%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.63 43.0 4.26e-01 80.3% 65.2%
4lizA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 54.0 4.25e-01 100.0% 52.9%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 43.0 3.74e-01 72.1% 87.5%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.62 53.0 4.44e-01 100.0% 71.4%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.83e-01 72.1% 59.8%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.89e-01 72.1% 63.1%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 42.0 3.84e-01 70.5% 60.0%
3l5hA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 3.87e-01 70.5% 59.0%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 43.0 3.13e-01 73.8% 37.7%
6usmB01 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 51.0 3.89e-01 93.4% 77.6%
1wgoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.61e-01 72.1% 50.5%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.60 41.0 3.22e-01 95.1% 32.3%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 49.0 4.17e-01 96.7% 96.3%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.59 42.0 3.47e-01 77.0% 75.9%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 42.0 3.19e-01 77.0% 77.5%
3fl7A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.58e-01 72.1% 54.7%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.58 50.0 3.49e-01 98.4% 74.6%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 47.0 3.98e-01 95.1% 95.5%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.57 40.0 3.42e-01 77.0% 60.6%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 2.82e-01 77.0% 32.5%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 2.93e-01 80.3% 31.9%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.55 41.0 3.97e-01 82.0% 81.7%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 40.0 3.20e-01 78.7% 80.0%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 45.0 3.56e-01 100.0% 75.0%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 3.03e-01 80.3% 52.4%
2dliA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.20e-01 70.5% 58.2%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 39.0 3.09e-01 78.7% 72.5%
1mkiA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 43.0 3.18e-01 91.8% 81.4%
3gqsB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 36.0 3.10e-01 70.5% 100.0%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.35e-01 78.7% 89.8%
3gldA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.53 39.0 3.08e-01 80.3% 91.2%
1b1zA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 41.0 3.27e-01 88.5% 100.0%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 45.0 3.61e-01 98.4% 63.5%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 39.0 3.30e-01 82.0% 93.4%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 42.0 3.19e-01 93.4% 94.6%
1d0nA06 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 34.0 2.84e-01 78.7% 33.9%
6v55A03 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.51 44.0 3.31e-01 100.0% 68.1%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.24e-01 100.0% 75.5%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 39.0 3.09e-01 88.5% 100.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961612 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.78 48.0 3.30e-01 93.4% 19.5%
2390776 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.78 50.0 3.55e-01 96.7% 23.5%
4117578 223.1.1.5 a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA 0.75 49.0 3.52e-01 95.1% 26.5%
3684527 221.1.5.3 a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › DUF7734 0.73 46.0 3.99e-01 95.1% 41.9%
4947142 4160.1.1.3 beta complex topology › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › PF26233 0.67 48.0 3.32e-01 77.0% 86.2%
3446768 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.65 49.0 3.27e-01 80.3% 48.5%
400603 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.65 55.0 4.40e-01 100.0% 59.7%
4948627 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.65 56.0 4.11e-01 100.0% 48.3%
3524567 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.65 45.0 3.81e-01 73.8% 48.6%
4268177 11.1.1.47 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.65 45.0 3.68e-01 72.1% 49.1%
3393962 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.65 44.0 3.85e-01 72.1% 54.7%
4448380 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.65 54.0 4.46e-01 98.4% 65.8%
165926 1.1.5.36 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.64 44.0 3.50e-01 73.8% 50.8%
3705856 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.63 44.0 2.85e-01 73.8% 46.3%
4425813 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.63 53.0 4.40e-01 100.0% 72.5%
4262317 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.63 53.0 4.01e-01 93.4% 43.4%
4097408 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 44.0 3.86e-01 73.8% 63.2%
3789140 101.1.2.115 alpha arrays › HTH › HTH › winged helix domain › CDC27 0.63 45.0 3.55e-01 77.0% 57.9%
5053721 2492.1.1.5 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.63 53.0 4.16e-01 100.0% 81.1%
4321843 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.63 46.0 3.20e-01 82.0% 37.8%
3942497 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 54.0 4.24e-01 100.0% 57.9%
3841084 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 3.76e-01 72.1% 56.7%
3941506 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.61 50.0 3.18e-01 93.4% 32.2%
3970696 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.61 49.0 4.02e-01 86.9% 92.9%
3816186 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.61 45.0 3.12e-01 80.3% 53.2%
None 0.61 50.0 3.75e-01 100.0% 47.2%
3528926 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 42.0 3.55e-01 73.8% 50.5%
3894061 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.60 41.0 3.65e-01 72.1% 56.7%
3775114 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.59e-01 72.1% 54.7%
4018178 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.60 50.0 3.34e-01 100.0% 57.1%
5011884 3563.1.1.1 alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.59 45.0 2.97e-01 82.0% 72.7%
3408671 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 40.0 3.53e-01 72.1% 55.8%
5062356 2492.1.1.5 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.58 49.0 3.45e-01 100.0% 50.2%
1937092 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.58 47.0 3.98e-01 95.1% 95.5%
4669519 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 45.0 3.65e-01 91.8% 90.4%
5024728 3563.1.1.1 alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.57 43.0 2.88e-01 82.0% 70.1%
4978505 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 39.0 2.64e-01 100.0% 18.0%
4989883 3268.1.1.0 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.57 44.0 4.23e-01 88.5% 98.7%
3403487 10.4.1.6 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › TEP1_CUB2 0.57 42.0 3.40e-01 78.7% 66.1%
3626962 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.56 47.0 3.28e-01 100.0% 59.6%
3704468 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 41.0 3.46e-01 82.0% 90.0%
3723416 212.1.1.12 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.55 39.0 3.06e-01 77.0% 75.4%
3395651 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.54 39.0 2.96e-01 78.7% 30.6%
3195037 4114.1.1.0 a+b two layers › PHP14-like › PHP14-like › PHP14-like 0.54 44.0 3.31e-01 100.0% 67.6%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 39.0 3.37e-01 82.0% 87.0%
3957779 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 40.0 3.33e-01 80.3% 90.0%
4618101 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 38.0 3.29e-01 77.0% 51.0%
3904529 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.17e-01 72.1% 52.0%
1117716 3680.1.1.1 a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C 0.53 45.0 3.61e-01 98.4% 63.5%
3211398 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 36.0 3.01e-01 70.5% 42.7%
5035204 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 36.0 2.70e-01 73.8% 78.7%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.51 40.0 3.69e-01 85.2% 95.0%
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.51 39.0 3.48e-01 82.0% 71.8%
3684143 1207.1.1.1 a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C 0.51 37.0 2.47e-01 80.3% 24.7%