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IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351948
Arc-VirIMGVR_UViG_3300001482_000079-3300001482-rank07_1021351948
Identity
- Kingdom:
- archaea
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-167
Domain cluster:
rep: IMGVR_UViG_3300005551_000276-3300005551-Ga0066843_100036591__D15-149
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04002.21 best | RadC | 51.0 | 1.90e-13 | 92.2% | 80.2% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.92 | 78.0 | 7.89e-01 | 89.1% | 88.9% |
| 1nmnA00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.60 | 43.0 | 4.43e-01 | 85.9% | 79.2% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 49.0 | 4.74e-01 | 91.4% | 79.6% |
| 2zztA00 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.59 | 31.0 | 3.70e-01 | 73.4% | 75.6% |
| 1yd9B00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.57 | 47.0 | 4.19e-01 | 89.1% | 90.9% |
| 5nfmA00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.57 | 29.0 | 3.61e-01 | 71.9% | 80.0% |
| 3gpgA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.57 | 47.0 | 4.32e-01 | 88.3% | 86.4% |
| 7xg9A01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.56 | 52.0 | 3.97e-01 | 100.0% | 96.5% |
| 7upvA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 50.0 | 3.50e-01 | 97.7% | 99.3% |
| 4jj9C00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 40.0 | 3.91e-01 | 75.8% | 89.7% |
| 1w15A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 38.0 | 3.83e-01 | 70.3% | 78.0% |
| 4jqrA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.55 | 41.0 | 3.37e-01 | 77.3% | 57.7% |
| 3tr3A00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.54 | 29.0 | 3.46e-01 | 73.4% | 80.5% |
| 2dhmA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.52 | 31.0 | 3.58e-01 | 77.3% | 82.2% |
| 3b7yA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 38.0 | 3.64e-01 | 74.2% | 69.4% |
| 3i9sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.90e-01 | 85.9% | 88.8% |
| 3htvA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 44.0 | 4.11e-01 | 97.7% | 98.2% |
| 2nclA00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.52 | 27.0 | 3.21e-01 | 71.9% | 75.3% |
| 3oc7A01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.50 | 39.0 | 3.56e-01 | 83.6% | 100.0% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4311602 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.95 | 81.0 | 8.31e-01 | 89.1% | 91.1% |
| 4270283 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.94 | 80.0 | 7.95e-01 | 89.1% | 84.2% |
| 4007865 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.94 | 80.0 | 7.53e-01 | 89.1% | 74.7% |
| 3963998 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.94 | 80.0 | 7.96e-01 | 89.1% | 86.2% |
| 4363048 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.94 | 80.0 | 7.98e-01 | 89.1% | 86.2% |
| 4329297 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.93 | 79.0 | 8.07e-01 | 89.1% | 89.6% |
| 4629743 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.93 | 79.0 | 7.74e-01 | 89.1% | 83.0% |
| 4125527 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.93 | 79.0 | 7.74e-01 | 89.1% | 83.0% |
| 4164704 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.92 | 79.0 | 7.71e-01 | 89.1% | 83.0% |
| 4435677 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.92 | 78.0 | 7.72e-01 | 89.1% | 84.2% |
| 4938024 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.92 | 77.0 | 7.99e-01 | 89.1% | 91.7% |
| 4280109 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.92 | 79.0 | 8.01e-01 | 90.6% | 90.4% |
| 4311623 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.92 | 79.0 | 7.78e-01 | 89.1% | 84.4% |
| 4224503 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 78.0 | 7.68e-01 | 89.1% | 84.2% |
| 3280482 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 77.0 | 7.97e-01 | 89.1% | 93.3% |
| 3509804 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.79 | 59.0 | 6.37e-01 | 85.9% | 91.7% |
| 3968676 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.75 | 59.0 | 6.22e-01 | 90.6% | 91.3% |
| 3282710 | 2492.1.1.35 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 | 0.73 | 64.0 | 5.83e-01 | 93.0% | 83.6% |
| 3943542 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.70 | 60.0 | 6.09e-01 | 91.4% | 92.8% |
| 5052468 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.65 | 58.0 | 5.38e-01 | 96.9% | 96.2% |
| 3691249 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.62 | 53.0 | 5.33e-01 | 92.2% | 90.0% |
| 4152762 | 2492.1.1.20 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 | 0.62 | 51.0 | 4.45e-01 | 86.7% | 87.9% |
| 4928628 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.62 | 31.0 | 3.74e-01 | 70.3% | 71.4% |
| 4960071 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.62 | 37.0 | 4.05e-01 | 80.5% | 71.4% |
| 5077924 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.62 | 32.0 | 3.86e-01 | 71.1% | 76.2% |
| 3275431 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.61 | 34.0 | 4.03e-01 | 78.9% | 80.0% |
| 3248282 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.61 | 33.0 | 3.94e-01 | 76.6% | 77.6% |
| 4947719 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 46.0 | 4.18e-01 | 77.3% | 85.5% |
| 4994132 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.61 | 37.0 | 4.00e-01 | 78.9% | 71.4% |
| 3861384 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.61 | 31.0 | 3.78e-01 | 72.7% | 76.2% |
| 5052078 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.61 | 31.0 | 3.79e-01 | 71.1% | 76.2% |
| 3991615 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.60 | 39.0 | 4.27e-01 | 84.4% | 83.0% |
| 5029779 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 36.0 | 3.70e-01 | 80.5% | 62.5% |
| 4954555 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 43.0 | 4.12e-01 | 75.8% | 100.0% |
| 4971758 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.59 | 30.0 | 3.63e-01 | 70.3% | 75.0% |
| 4975755 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.59 | 31.0 | 3.71e-01 | 73.4% | 75.3% |
| 3374748 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.59 | 30.0 | 3.48e-01 | 70.3% | 66.7% |
| 5017891 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.58 | 34.0 | 3.91e-01 | 79.7% | 80.0% |
| 4046978 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.58 | 38.0 | 4.17e-01 | 84.4% | 84.0% |
| 3260805 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 42.0 | 3.65e-01 | 76.6% | 90.3% |
| 4092361 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.57 | 52.0 | 3.99e-01 | 100.0% | 96.1% |
| 4996505 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.57 | 29.0 | 3.54e-01 | 71.1% | 76.2% |
| 5886 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.56 | 32.0 | 3.44e-01 | 78.9% | 61.9% |
| 4015680 | 327.2.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like | 0.56 | 33.0 | 3.74e-01 | 79.7% | 80.0% |
| 4049903 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.56 | 33.0 | 3.82e-01 | 72.7% | 82.2% |
| 3835553 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.55 | 49.0 | 4.33e-01 | 98.4% | 96.2% |
| 4989677 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 49.0 | 4.37e-01 | 97.7% | 90.3% |
| 4137462 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.54 | 36.0 | 3.97e-01 | 71.9% | 85.0% |
| 4012907 | 327.2.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like | 0.54 | 37.0 | 3.97e-01 | 82.0% | 83.3% |
| 3667379 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.54 | 40.0 | 4.07e-01 | 89.1% | 78.5% |
| 5041016 | 10.1.2.181 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 | 0.54 | 39.0 | 3.65e-01 | 76.6% | 90.9% |
| 3661094 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.54 | 33.0 | 3.70e-01 | 74.2% | 80.0% |
| 3787563 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.53 | 34.0 | 3.68e-01 | 74.2% | 77.1% |
| 3915206 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.53 | 36.0 | 3.27e-01 | 70.3% | 85.7% |
| 3251815 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 37.0 | 3.86e-01 | 73.4% | 90.8% |
| 3385453 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.52 | 43.0 | 4.02e-01 | 90.6% | 93.3% |
| 3272524 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 34.0 | 3.54e-01 | 78.9% | 70.8% |
| 3333290 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.51 | 38.0 | 3.39e-01 | 76.6% | 91.1% |
| 4380266 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 36.0 | 2.99e-01 | 73.4% | 73.0% |
| 5064594 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 40.0 | 3.78e-01 | 83.6% | 98.1% |
| 3493644 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.51 | 37.0 | 3.41e-01 | 75.8% | 91.5% |
| 4026116 | 327.2.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like | 0.50 | 29.0 | 3.23e-01 | 76.6% | 71.7% |