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IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351952

Arc-Vir

IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351952

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-53
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.81 61.0 5.01e-01 94.0% 46.1%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.80 60.0 6.44e-01 86.0% 100.0%
3r64A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.79 57.0 3.48e-01 76.0% 58.9%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.78 55.0 4.36e-01 74.0% 45.8%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.83e-01 94.0% 73.8%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.77 60.0 4.85e-01 96.0% 46.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.77 66.0 5.48e-01 98.0% 56.7%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 62.0 5.39e-01 100.0% 60.3%
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.75 56.0 3.41e-01 80.0% 31.7%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.74 57.0 4.05e-01 84.0% 82.1%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.74 61.0 3.70e-01 90.0% 33.6%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.73 55.0 3.37e-01 80.0% 33.5%
7t2rC01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.73 55.0 5.32e-01 84.0% 73.7%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.72 56.0 4.13e-01 86.0% 78.9%
3hdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 57.0 3.96e-01 88.0% 70.8%
6ukcA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 57.0 4.22e-01 90.0% 97.0%
3fdiB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 58.0 3.91e-01 88.0% 74.3%
4d3pA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.72 56.0 4.00e-01 86.0% 79.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.71 61.0 4.97e-01 100.0% 72.2%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.71 61.0 5.46e-01 96.0% 69.6%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.70 58.0 4.03e-01 90.0% 95.5%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.70 51.0 4.20e-01 78.0% 47.1%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.47e-01 94.0% 91.7%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 48.0 4.94e-01 94.0% 83.3%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 46.0 4.74e-01 84.0% 79.2%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.66 46.0 3.71e-01 74.0% 48.0%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 51.0 5.12e-01 96.0% 84.9%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 49.0 4.99e-01 92.0% 91.5%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 50.0 4.58e-01 96.0% 63.4%
7u32G01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.64 45.0 4.41e-01 94.0% 67.9%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 53.0 5.04e-01 98.0% 85.0%
3go5A04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.87e-01 98.0% 93.7%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 52.0 4.70e-01 100.0% 75.7%
1bw5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 47.0 4.50e-01 100.0% 80.3%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.53e-01 100.0% 82.2%
1z82B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 48.0 3.64e-01 100.0% 49.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 45.0 4.25e-01 98.0% 83.6%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 43.0 3.23e-01 90.0% 82.6%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.55 37.0 3.17e-01 74.0% 39.8%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 43.0 4.30e-01 96.0% 90.4%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.52 38.0 3.53e-01 90.0% 80.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013347 101.1.2.946 alpha arrays › HTH › HTH › winged helix domain › PF26555 0.86 71.0 7.42e-01 92.0% 100.0%
4274974 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.84 56.0 4.38e-01 70.0% 44.0%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.82 72.0 6.27e-01 100.0% 65.3%
4363995 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.78 68.0 4.94e-01 100.0% 55.7%
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 5.82e-01 96.0% 67.1%
3656767 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.76 59.0 6.17e-01 98.0% 97.8%
3277622 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.76 66.0 3.87e-01 98.0% 12.6%
5053497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 6.13e-01 98.0% 95.0%
3829115 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.76 61.0 5.66e-01 98.0% 70.8%
3820907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 5.54e-01 98.0% 70.8%
5046294 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.74 58.0 5.74e-01 96.0% 81.8%
4033200 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 53.0 5.53e-01 80.0% 88.9%
3312794 101.1.3.22 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 0.71 58.0 5.24e-01 98.0% 65.3%
3439843 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.71 58.0 5.03e-01 98.0% 57.6%
3243507 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.71 61.0 5.66e-01 100.0% 86.2%
3438399 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.71 58.0 5.21e-01 98.0% 65.3%
1169399 101.35.1.2 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp 0.71 56.0 5.59e-01 96.0% 86.5%
3932033 102.1.1.8 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › BAF 0.71 57.0 4.99e-01 90.0% 85.3%
4102625 132.3.1.1 alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD 0.70 60.0 5.65e-01 94.0% 78.3%
3813940 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.70 55.0 5.21e-01 94.0% 72.3%
3582492 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 49.0 3.29e-01 76.0% 83.4%
3293154 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.69 56.0 5.42e-01 98.0% 81.7%
3928773 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 59.0 5.25e-01 100.0% 70.7%
5029463 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.30e-01 92.0% 83.6%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.68 55.0 5.22e-01 98.0% 75.4%
4025313 3721.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.68 53.0 4.71e-01 84.0% 71.4%
3886164 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.68 55.0 5.52e-01 100.0% 94.0%
3989506 3721.1.1.0 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain 0.68 51.0 4.69e-01 82.0% 70.8%
3340005 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.67 54.0 4.69e-01 98.0% 55.7%
3334461 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.67 54.0 4.91e-01 98.0% 65.3%
4887380 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.67 47.0 3.74e-01 74.0% 35.5%
3694221 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.67 54.0 5.20e-01 94.0% 78.3%
3798210 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 5.41e-01 92.0% 98.0%
3574083 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.67 51.0 5.24e-01 86.0% 95.6%
3254140 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.66 57.0 3.85e-01 94.0% 30.9%
3528634 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.66 56.0 4.78e-01 98.0% 64.7%
3328316 3721.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.66 50.0 4.51e-01 82.0% 68.6%
3579249 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 4.73e-01 100.0% 74.1%
4586835 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.66 56.0 5.18e-01 98.0% 78.5%
3960202 3721.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.65 51.0 4.53e-01 84.0% 87.1%
3279199 3721.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.65 51.0 4.54e-01 84.0% 84.3%
3897457 101.1.2.360 alpha arrays › HTH › HTH › winged helix domain › Homeodomain 0.65 52.0 4.73e-01 96.0% 65.7%
4213222 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 54.0 5.04e-01 96.0% 75.0%
3768463 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.94e-01 96.0% 76.7%
3343813 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.65 54.0 5.04e-01 98.0% 75.4%
3305598 101.1.1.223 alpha arrays › HTH › HTH › Three-helical HTH › ELK+Homeobox_KN 0.65 54.0 4.40e-01 98.0% 49.0%
3931388 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 5.10e-01 98.0% 85.5%
4404513 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 52.0 4.71e-01 96.0% 64.0%
163004 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 50.0 4.58e-01 96.0% 63.4%
3470203 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.64 52.0 5.12e-01 94.0% 94.5%
3240028 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 54.0 5.35e-01 100.0% 92.7%
3525151 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 49.0 5.08e-01 90.0% 97.8%
4983598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.75e-01 98.0% 81.5%
3454275 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 4.97e-01 92.0% 92.0%
4275568 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 53.0 4.86e-01 100.0% 82.9%
3507787 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 5.00e-01 94.0% 98.0%
3560402 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.63 49.0 4.61e-01 96.0% 70.8%
3229130 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 47.0 4.74e-01 96.0% 88.0%
3996572 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 46.0 4.73e-01 94.0% 95.6%
3349824 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 49.0 4.06e-01 88.0% 55.6%
3197246 3721.1.1.0 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain 0.61 45.0 4.08e-01 80.0% 67.1%
4962704 3317.1.1.8 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › DUF7119 0.61 39.0 3.66e-01 78.0% 50.8%
160865 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 50.0 4.44e-01 100.0% 63.7%
3730715 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 49.0 4.87e-01 100.0% 94.5%
10305 7516.1.1.25 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB 0.59 51.0 2.97e-01 100.0% 14.0%
3730259 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.52 40.0 3.77e-01 90.0% 87.7%
143586 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.52 38.0 3.53e-01 90.0% 80.0%