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IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351957
Arc-VirIMGVR_UViG_3300001482_000079-3300001482-rank07_1021351957
Identity
- Kingdom:
- archaea
Quality
81.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-54
Domain cluster:
representative
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.92 | 77.0 | 6.91e-01 | 93.8% | 67.7% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.88 | 78.0 | 5.80e-01 | 100.0% | 41.0% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.86 | 71.0 | 7.01e-01 | 89.6% | 86.0% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.84 | 73.0 | 5.63e-01 | 100.0% | 53.2% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.84 | 72.0 | 5.96e-01 | 100.0% | 78.4% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 70.0 | 6.35e-01 | 100.0% | 69.2% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 72.0 | 5.80e-01 | 100.0% | 51.0% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.83 | 72.0 | 5.51e-01 | 100.0% | 48.2% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.82 | 71.0 | 6.65e-01 | 100.0% | 80.3% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 73.0 | 6.10e-01 | 100.0% | 65.4% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.82 | 71.0 | 4.71e-01 | 100.0% | 24.7% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.82 | 66.0 | 4.29e-01 | 93.8% | 21.6% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.81 | 70.0 | 6.47e-01 | 100.0% | 78.1% |
| 2jdiG01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.81 | 68.0 | 6.29e-01 | 93.8% | 80.3% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.81 | 66.0 | 5.54e-01 | 89.6% | 54.4% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 69.0 | 5.99e-01 | 100.0% | 77.3% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.79 | 68.0 | 5.96e-01 | 100.0% | 66.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 69.0 | 6.54e-01 | 100.0% | 84.5% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.79 | 66.0 | 4.94e-01 | 95.8% | 38.5% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.77 | 68.0 | 5.09e-01 | 100.0% | 45.0% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.77 | 64.0 | 5.45e-01 | 100.0% | 68.6% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.76 | 65.0 | 6.48e-01 | 95.8% | 100.0% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 61.0 | 6.11e-01 | 100.0% | 92.2% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 63.0 | 4.57e-01 | 95.8% | 43.1% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 64.0 | 5.15e-01 | 100.0% | 52.0% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.74 | 63.0 | 5.99e-01 | 97.9% | 100.0% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.74 | 61.0 | 4.59e-01 | 100.0% | 38.0% |
| 1vp7A00 | 1.10.287.1040 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit | 0.73 | 59.0 | 5.39e-01 | 93.8% | 67.6% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 61.0 | 5.37e-01 | 100.0% | 71.1% |
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.73 | 59.0 | 5.26e-01 | 91.7% | 63.8% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 63.0 | 5.74e-01 | 100.0% | 93.9% |
| 2ehwA00 | 6.10.140.1220 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 58.0 | 4.65e-01 | 100.0% | 41.7% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 59.0 | 5.82e-01 | 95.8% | 86.8% |
| 8d8lN01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 57.0 | 4.80e-01 | 95.8% | 51.2% |
| 4dnnA00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 60.0 | 6.02e-01 | 100.0% | 100.0% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 59.0 | 5.24e-01 | 100.0% | 65.3% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.70 | 57.0 | 5.10e-01 | 100.0% | 64.8% |
| 1u5eA01 | 6.10.250.220 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 59.0 | 5.75e-01 | 100.0% | 90.6% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.69 | 56.0 | 3.94e-01 | 100.0% | 27.8% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.69 | 55.0 | 4.96e-01 | 91.7% | 65.7% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 58.0 | 5.31e-01 | 100.0% | 98.5% |
| 3fgrA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.68 | 58.0 | 4.25e-01 | 95.8% | 56.2% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 57.0 | 5.37e-01 | 100.0% | 77.4% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.67 | 57.0 | 4.83e-01 | 100.0% | 60.0% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.66 | 55.0 | 4.99e-01 | 100.0% | 71.4% |
| 5u1xA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.66 | 54.0 | 5.56e-01 | 95.8% | 97.8% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.65 | 52.0 | 5.21e-01 | 97.9% | 100.0% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 52.0 | 4.16e-01 | 100.0% | 41.7% |
| 2lo0A00 | 1.10.286.70 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain | 0.65 | 50.0 | 5.20e-01 | 85.4% | 100.0% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.64 | 56.0 | 4.32e-01 | 100.0% | 46.8% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 4.96e-01 | 100.0% | 87.9% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 51.0 | 5.15e-01 | 93.8% | 91.8% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 51.0 | 4.70e-01 | 100.0% | 69.1% |
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.62 | 52.0 | 3.49e-01 | 100.0% | 63.7% |
| 3bh1A02 | 1.20.1570.10 | Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like | 0.62 | 46.0 | 3.87e-01 | 91.7% | 43.6% |
| 3p5jB02 | 1.10.20.120 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.60 | 53.0 | 4.17e-01 | 97.9% | 50.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3750377 | 605.1.1.254 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MRVI1 | 0.95 | 88.0 | 7.23e-01 | 100.0% | 60.0% |
| 3947564 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.94 | 87.0 | 7.71e-01 | 100.0% | 73.8% |
| 4944884 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.92 | 84.0 | 6.57e-01 | 100.0% | 50.5% |
| 5053090 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.90 | 81.0 | 7.52e-01 | 100.0% | 83.3% |
| 4473366 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.89 | 80.0 | 6.84e-01 | 100.0% | 65.3% |
| 4645372 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.87 | 78.0 | 6.17e-01 | 100.0% | 51.6% |
| 3678035 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.87 | 77.0 | 6.77e-01 | 100.0% | 68.6% |
| 3582431 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.87 | 75.0 | 5.19e-01 | 95.8% | 44.0% |
| 3253283 | 192.5.1.14 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA | 0.86 | 76.0 | 6.06e-01 | 100.0% | 51.6% |
| 4146694 | 192.29.1.277 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin | 0.83 | 72.0 | 6.57e-01 | 100.0% | 75.4% |
| 3436926 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 72.0 | 6.30e-01 | 100.0% | 66.2% |
| 3504099 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.82 | 67.0 | 6.90e-01 | 100.0% | 95.6% |
| 3382780 | 2006.1.1.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid | 0.82 | 71.0 | 4.20e-01 | 100.0% | 14.0% |
| 4030332 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.81 | 72.0 | 4.38e-01 | 100.0% | 17.5% |
| 3962991 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 72.0 | 4.73e-01 | 100.0% | 77.9% |
| 2456957 | 192.13.1.1 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 | 0.81 | 72.0 | 6.86e-01 | 100.0% | 87.5% |
| 3968484 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.81 | 71.0 | 6.28e-01 | 100.0% | 68.6% |
| 3819233 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.80 | 70.0 | 5.33e-01 | 100.0% | 43.5% |
| 3967403 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.80 | 70.0 | 6.39e-01 | 100.0% | 73.8% |
| 3944501 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.78 | 69.0 | 5.83e-01 | 100.0% | 67.5% |
| 3386973 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.78 | 67.0 | 5.51e-01 | 100.0% | 77.8% |
| 4193561 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.78 | 64.0 | 6.58e-01 | 93.8% | 100.0% |
| 3973636 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 67.0 | 5.82e-01 | 100.0% | 73.3% |
| 3580316 | 4082.1.1.0 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain | 0.77 | 61.0 | 6.19e-01 | 91.7% | 100.0% |
| 4210642 | 3755.1.1.12 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ | 0.77 | 65.0 | 4.83e-01 | 100.0% | 48.5% |
| 3484950 | 605.8.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like | 0.76 | 64.0 | 6.60e-01 | 97.9% | 100.0% |
| 3933449 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.76 | 65.0 | 5.37e-01 | 100.0% | 54.4% |
| 3715120 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.76 | 63.0 | 5.91e-01 | 95.8% | 75.0% |
| 3663052 | 5043.1.1.13 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Sugar_tr | 0.76 | 65.0 | 5.80e-01 | 100.0% | 68.6% |
| 3973899 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.74 | 64.0 | 4.62e-01 | 100.0% | 98.6% |
| 3735933 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.73 | 62.0 | 4.49e-01 | 100.0% | 35.9% |
| 3231463 | 632.8.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C | 0.73 | 63.0 | 5.09e-01 | 100.0% | 87.4% |
| 3482273 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.73 | 62.0 | 4.86e-01 | 100.0% | 45.9% |
| 3246288 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.73 | 63.0 | 5.12e-01 | 100.0% | 58.9% |
| 4396464 | 605.1.1.305 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Exonuc_VII_S | 0.73 | 62.0 | 5.88e-01 | 100.0% | 81.7% |
| 3876167 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.72 | 64.0 | 4.34e-01 | 100.0% | 63.4% |
| 3167364 | 2004.1.1.481 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 | 0.72 | 61.0 | 3.58e-01 | 100.0% | 11.7% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.71 | 58.0 | 5.21e-01 | 100.0% | 64.8% |
| 3696717 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 59.0 | 4.01e-01 | 97.9% | 65.3% |
| 5020290 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.71 | 58.0 | 5.65e-01 | 100.0% | 85.5% |
| 4846660 | 192.18.1.1 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › T3SS_needle_F | 0.70 | 58.0 | 5.18e-01 | 100.0% | 68.9% |
| 4976214 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.70 | 56.0 | 3.85e-01 | 100.0% | 24.5% |
| 3613914 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.70 | 57.0 | 5.11e-01 | 100.0% | 66.7% |
| 3987802 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.64 | 57.0 | 5.29e-01 | 100.0% | 85.0% |
| 3462297 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 57.0 | 4.90e-01 | 100.0% | 68.0% |
| 4031046 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.62 | 49.0 | 4.74e-01 | 100.0% | 85.0% |
| 3974625 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.61 | 47.0 | 4.40e-01 | 100.0% | 68.6% |
D2
medium
residues 60-110
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y8nB01 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.66 | 44.0 | 4.76e-01 | 86.3% | 85.7% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 45.0 | 3.46e-01 | 100.0% | 34.5% |
| 2y43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 45.0 | 3.87e-01 | 82.4% | 48.9% |
| 5nblA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 49.0 | 3.66e-01 | 98.0% | 82.1% |
| 5ly3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 50.0 | 3.47e-01 | 100.0% | 75.9% |
| 4nsxA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 44.0 | 2.75e-01 | 80.4% | 98.7% |
| 3s98A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 48.0 | 4.25e-01 | 96.1% | 100.0% |
| 5adxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 48.0 | 3.53e-01 | 100.0% | 78.4% |
| 2nrhB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 41.0 | 4.09e-01 | 96.1% | 69.1% |
| 3js6A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 47.0 | 3.33e-01 | 100.0% | 78.7% |
| 8d3lA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.58 | 45.0 | 3.89e-01 | 100.0% | 51.1% |
| 3t7zA00 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.58 | 46.0 | 3.73e-01 | 98.0% | 65.5% |
| 3dwlA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 46.0 | 3.44e-01 | 100.0% | 77.3% |
| 7mi4A02 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.58 | 45.0 | 4.05e-01 | 100.0% | 60.8% |
| 3cihA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 48.0 | 3.70e-01 | 98.0% | 40.7% |
| 3lm2A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 46.0 | 3.92e-01 | 100.0% | 59.8% |
| 2yzsA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.56 | 42.0 | 3.75e-01 | 100.0% | 55.0% |
| 2p6rA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 47.0 | 3.22e-01 | 100.0% | 95.4% |
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 44.0 | 3.24e-01 | 98.0% | 80.1% |
| 3o58E00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 42.0 | 2.80e-01 | 92.2% | 40.4% |
| 1k8kA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 43.0 | 3.44e-01 | 100.0% | 73.5% |
| 3h09B02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.54 | 45.0 | 2.63e-01 | 98.0% | 11.4% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.54 | 39.0 | 3.15e-01 | 80.4% | 74.3% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.54 | 41.0 | 3.63e-01 | 100.0% | 54.9% |
| 3hi0A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.54 | 43.0 | 3.12e-01 | 98.0% | 84.7% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.54 | 36.0 | 3.33e-01 | 78.4% | 51.4% |
| 5agaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.00e-01 | 100.0% | 96.2% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 42.0 | 2.78e-01 | 98.0% | 20.4% |
| 2dk1A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 42.0 | 4.28e-01 | 100.0% | 96.0% |
| 3nycA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 39.0 | 2.70e-01 | 94.1% | 24.7% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 40.0 | 3.89e-01 | 90.2% | 93.1% |
| 4xvxB02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.51 | 38.0 | 3.14e-01 | 86.3% | 98.1% |
| 5tkwA02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.51 | 42.0 | 3.94e-01 | 100.0% | 93.9% |
| 4d0yA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.50 | 37.0 | 2.68e-01 | 86.3% | 97.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4934214 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.72 | 59.0 | 5.53e-01 | 90.2% | 100.0% |
| 3436497 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 51.0 | 4.86e-01 | 76.5% | 76.7% |
| 3503411 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 48.0 | 5.01e-01 | 78.4% | 93.3% |
| 3961091 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 52.0 | 4.09e-01 | 100.0% | 95.0% |
| 3663415 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.62 | 46.0 | 4.38e-01 | 82.4% | 68.3% |
| 3606139 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 48.0 | 4.71e-01 | 84.3% | 96.3% |
| 3931141 | 381.1.1.0 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat | 0.60 | 44.0 | 4.28e-01 | 80.4% | 70.7% |
| 3621229 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.60 | 46.0 | 4.20e-01 | 84.3% | 61.4% |
| 3268542 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.60 | 48.0 | 3.78e-01 | 100.0% | 94.1% |
| 3798500 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 47.0 | 2.89e-01 | 98.0% | 34.0% |
| 3926002 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 48.0 | 3.80e-01 | 100.0% | 90.4% |
| 3451730 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 43.0 | 3.86e-01 | 82.4% | 55.7% |
| 3547031 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 47.0 | 3.81e-01 | 96.1% | 67.3% |
| 4046811 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.58 | 45.0 | 2.84e-01 | 100.0% | 14.4% |
| 3385541 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.58 | 44.0 | 2.81e-01 | 98.0% | 15.2% |
| 4522746 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 48.0 | 3.55e-01 | 100.0% | 38.1% |
| 3943749 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 46.0 | 3.05e-01 | 100.0% | 30.6% |
| 3609014 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.56 | 48.0 | 3.16e-01 | 98.0% | 28.7% |
| 4392322 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.56 | 43.0 | 2.72e-01 | 100.0% | 14.7% |
| 4405603 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.56 | 43.0 | 2.75e-01 | 100.0% | 15.3% |
| 5042161 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.56 | 47.0 | 4.60e-01 | 96.1% | 100.0% |
| 1723569 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.56 | 43.0 | 2.76e-01 | 100.0% | 15.8% |
| 1293086 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.56 | 44.0 | 3.06e-01 | 90.2% | 97.3% |
| 3932976 | 2484.5.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase | 0.55 | 47.0 | 3.91e-01 | 100.0% | 92.6% |
| 4947563 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.55 | 43.0 | 2.70e-01 | 100.0% | 13.7% |
| 2124247 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.55 | 42.0 | 3.19e-01 | 100.0% | 32.6% |
| 3403644 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.54 | 40.0 | 2.66e-01 | 86.3% | 30.2% |
| 3238074 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.54 | 46.0 | 3.07e-01 | 98.0% | 27.3% |
| 4057206 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 44.0 | 3.66e-01 | 96.1% | 78.9% |
| 5054004 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.53 | 42.0 | 2.96e-01 | 100.0% | 93.8% |
| 3231221 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.52 | 43.0 | 2.85e-01 | 100.0% | 26.8% |
| 1892334 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.52 | 43.0 | 3.73e-01 | 100.0% | 73.6% |
| 4276336 | 10.32.1.38 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like | 0.52 | 37.0 | 2.83e-01 | 82.4% | 98.6% |
| 3742477 | 831.1.1.2 ↗ | a+b two layers › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain › Spt20_SEP | 0.51 | 41.0 | 3.86e-01 | 98.0% | 97.1% |
| 3880809 | 385.1.1.13 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TSP1_CCN | 0.51 | 38.0 | 3.00e-01 | 88.2% | 96.1% |
| 3632357 | 831.1.1.2 ↗ | a+b two layers › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain › Spt20_SEP | 0.50 | 41.0 | 3.29e-01 | 98.0% | 57.4% |
| 1412146 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.50 | 41.0 | 3.67e-01 | 98.0% | 71.2% |