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IMGVR_UViG_3300001485_000920-3300001485-rank08_1004899415
Arc-VirIMGVR_UViG_3300001485_000920-3300001485-rank08_1004899415
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-109
Domain cluster:
rep: IMGVR_UViG_3300038365_000136-3300038365-Ga0134850_000682_18037_18504__D35-147
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27418.1 best | GINS23_N | 31.2 | 3.30e-07 | 100.0% | 85.9% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 80.0 | 7.79e-01 | 93.4% | 93.8% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.86 | 79.0 | 6.69e-01 | 97.2% | 64.2% |
| 2e9xD01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 76.0 | 6.92e-01 | 100.0% | 84.7% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.77 | 53.0 | 4.57e-01 | 70.8% | 68.3% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 71.0 | 6.62e-01 | 100.0% | 98.4% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 44.0 | 5.30e-01 | 78.3% | 91.5% |
| 2e9xB02 | 1.20.58.1020 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 64.0 | 6.40e-01 | 100.0% | 98.2% |
| 1a36A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.70 | 45.0 | 3.78e-01 | 81.1% | 38.9% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 45.0 | 5.24e-01 | 82.1% | 94.5% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 48.0 | 5.12e-01 | 70.8% | 100.0% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.69 | 40.0 | 4.80e-01 | 78.3% | 85.9% |
| 4eahA00 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.68 | 49.0 | 3.41e-01 | 75.5% | 49.3% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.68 | 45.0 | 4.44e-01 | 88.7% | 63.7% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.68 | 47.0 | 5.17e-01 | 71.7% | 94.0% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.67 | 43.0 | 4.22e-01 | 81.1% | 59.8% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 51.0 | 3.93e-01 | 88.7% | 37.4% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 44.0 | 4.51e-01 | 70.8% | 90.5% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.63 | 43.0 | 3.84e-01 | 71.7% | 50.3% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 45.0 | 4.17e-01 | 74.5% | 93.8% |
| 3tulB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 43.0 | 4.01e-01 | 82.1% | 57.1% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.62 | 46.0 | 4.87e-01 | 86.8% | 91.2% |
| 4oh3A00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.58 | 45.0 | 2.88e-01 | 82.1% | 33.6% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 45.0 | 4.69e-01 | 82.1% | 90.6% |
| 3dyjA02 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.57 | 40.0 | 3.56e-01 | 71.7% | 58.3% |
| 1s2xA00 | 1.20.190.30 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ | 0.55 | 47.0 | 3.95e-01 | 94.3% | 85.6% |
| 1m7wA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 40.0 | 3.20e-01 | 84.0% | 65.5% |
ECOD (67)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939412 | 4163.1.1.4 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › PF27418 | 0.96 | 93.0 | 8.64e-01 | 100.0% | 89.6% |
| 5057882 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.95 | 92.0 | 8.71e-01 | 100.0% | 93.3% |
| 4932083 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.95 | 91.0 | 8.65e-01 | 100.0% | 95.8% |
| 5045487 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.94 | 91.0 | 8.48e-01 | 100.0% | 91.2% |
| 4941389 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.94 | 90.0 | 8.59e-01 | 100.0% | 91.7% |
| 4970403 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.93 | 90.0 | 8.12e-01 | 100.0% | 88.9% |
| 4953775 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.93 | 90.0 | 8.25e-01 | 100.0% | 96.9% |
| 5028407 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.93 | 89.0 | 8.16e-01 | 100.0% | 88.5% |
| 4959248 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.92 | 88.0 | 8.39e-01 | 100.0% | 97.5% |
| 5034282 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.92 | 88.0 | 8.26e-01 | 100.0% | 93.6% |
| 5013157 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.92 | 82.0 | 7.59e-01 | 93.4% | 81.5% |
| 4967017 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.91 | 87.0 | 8.27e-01 | 100.0% | 98.3% |
| 5071229 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.91 | 81.0 | 8.19e-01 | 93.4% | 99.0% |
| 4943470 | 4163.1.1.7 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Gins51_C | 0.90 | 85.0 | 8.14e-01 | 100.0% | 94.2% |
| 5056324 | 4163.1.2.2 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › PF27418 | 0.90 | 82.0 | 8.33e-01 | 100.0% | 96.2% |
| 5027044 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.89 | 84.0 | 7.79e-01 | 100.0% | 88.5% |
| 4982790 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.88 | 80.0 | 8.22e-01 | 95.3% | 99.0% |
| 5049680 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.88 | 79.0 | 7.86e-01 | 95.3% | 94.5% |
| 4975581 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.87 | 81.0 | 7.99e-01 | 97.2% | 98.2% |
| 4944186 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.87 | 82.0 | 8.16e-01 | 98.1% | 95.4% |
| 4979634 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.87 | 82.0 | 7.96e-01 | 100.0% | 97.4% |
| 4937172 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.87 | 83.0 | 8.06e-01 | 100.0% | 93.9% |
| 4933006 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.87 | 80.0 | 7.94e-01 | 100.0% | 93.6% |
| 4973336 | 4163.1.1.4 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › PF27418 | 0.86 | 82.0 | 8.07e-01 | 100.0% | 98.2% |
| 4999891 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.86 | 79.0 | 7.98e-01 | 96.2% | 98.1% |
| 5000882 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.86 | 81.0 | 7.73e-01 | 100.0% | 93.3% |
| 144027 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.86 | 79.0 | 7.78e-01 | 97.2% | 93.7% |
| 5065915 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.85 | 80.0 | 7.79e-01 | 100.0% | 98.3% |
| 5079049 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.84 | 74.0 | 7.36e-01 | 93.4% | 94.5% |
| 4991615 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.84 | 74.0 | 7.51e-01 | 92.5% | 95.2% |
| 5011187 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.84 | 80.0 | 7.73e-01 | 100.0% | 97.4% |
| 5037501 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.83 | 79.0 | 7.70e-01 | 100.0% | 93.0% |
| 4947955 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.83 | 75.0 | 7.41e-01 | 96.2% | 95.5% |
| 4983057 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.80 | 67.0 | 6.91e-01 | 86.8% | 93.0% |
| 4994654 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.80 | 74.0 | 7.09e-01 | 100.0% | 94.2% |
| 4061425 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.77 | 70.0 | 6.56e-01 | 99.1% | 96.9% |
| 3699630 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.77 | 60.0 | 5.60e-01 | 82.1% | 71.5% |
| 4239796 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.77 | 71.0 | 6.26e-01 | 100.0% | 78.0% |
| 5024994 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.77 | 71.0 | 6.79e-01 | 100.0% | 96.7% |
| 4995305 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.76 | 52.0 | 5.53e-01 | 70.8% | 95.8% |
| 3597548 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.76 | 59.0 | 5.34e-01 | 82.1% | 66.4% |
| 3598728 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.75 | 59.0 | 5.47e-01 | 82.1% | 71.5% |
| 3723805 | 604.1.1.123 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF202 | 0.74 | 44.0 | 4.63e-01 | 79.2% | 65.3% |
| 3767103 | 109.4.1.1355 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_N, COG6_C | 0.73 | 66.0 | 4.14e-01 | 100.0% | 33.5% |
| 3569150 | 109.4.1.911 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C | 0.73 | 66.0 | 4.26e-01 | 100.0% | 39.6% |
| 3233652 | 109.4.1.911 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C | 0.73 | 66.0 | 4.24e-01 | 100.0% | 37.7% |
| 3488077 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.72 | 48.0 | 5.08e-01 | 71.7% | 75.8% |
| 3992672 | 109.4.1.911 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C | 0.71 | 64.0 | 4.10e-01 | 100.0% | 37.7% |
| 3637359 | 604.10.1.7 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › DUF202 | 0.69 | 44.0 | 4.55e-01 | 73.6% | 68.0% |
| 3244449 | 3755.3.1.408 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Zw10_N | 0.69 | 54.0 | 4.51e-01 | 83.0% | 48.9% |
| 4963550 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.67 | 47.0 | 3.84e-01 | 73.6% | 73.0% |
| 3630625 | 5039.1.1.1 ↗ | alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 | 0.66 | 50.0 | 3.70e-01 | 78.3% | 74.1% |
| 5072457 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.66 | 46.0 | 3.65e-01 | 70.8% | 71.5% |
| 4877500 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.66 | 41.0 | 4.20e-01 | 74.5% | 64.1% |
| 3257684 | 109.4.1.1341 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG3_N, COG3_C | 0.66 | 59.0 | 4.56e-01 | 100.0% | 55.0% |
| 4931283 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.65 | 46.0 | 3.66e-01 | 73.6% | 68.6% |
| 3477850 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.65 | 50.0 | 4.05e-01 | 81.1% | 70.3% |
| 3488333 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 49.0 | 4.76e-01 | 79.2% | 94.8% |
| 3715557 | 109.4.1.1341 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG3_N, COG3_C | 0.63 | 56.0 | 3.61e-01 | 100.0% | 36.7% |
| 3290203 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.62 | 43.0 | 4.41e-01 | 76.4% | 72.4% |
| 4437443 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.60 | 42.0 | 4.46e-01 | 84.0% | 83.2% |
| 3655628 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.59 | 48.0 | 3.69e-01 | 86.8% | 41.7% |
| 3993014 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.58 | 43.0 | 3.76e-01 | 85.8% | 50.3% |
| 3170937 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.58 | 46.0 | 3.30e-01 | 82.1% | 38.5% |
| 4983021 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.58 | 44.0 | 3.92e-01 | 86.8% | 56.7% |
| 3840817 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.58 | 49.0 | 4.14e-01 | 92.5% | 72.0% |
| 5029889 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.54 | 42.0 | 3.16e-01 | 83.0% | 47.8% |