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IMGVR_UViG_3300001592_000635-3300001592-Draft_100252984
Arc-VirIMGVR_UViG_3300001592_000635-3300001592-Draft_100252984
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-93
Domain cluster:
rep: NC_041880.1__YP_009595356.1__FDG97_gp219__00131__D6-93
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.73 | 67.0 | 4.73e-01 | 100.0% | 48.6% |
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.67 | 58.0 | 3.97e-01 | 97.6% | 36.9% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.67 | 47.0 | 4.95e-01 | 94.0% | 81.3% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.67 | 53.0 | 4.42e-01 | 85.7% | 70.3% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.64 | 38.0 | 3.75e-01 | 77.4% | 54.3% |
| 1v4eA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 54.0 | 3.83e-01 | 100.0% | 61.8% |
| 1jkvA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 53.0 | 4.13e-01 | 98.8% | 75.6% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.61 | 45.0 | 4.02e-01 | 92.9% | 55.6% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 44.0 | 4.42e-01 | 89.3% | 75.9% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.59 | 41.0 | 3.58e-01 | 82.1% | 48.4% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 51.0 | 4.14e-01 | 100.0% | 90.2% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.58 | 41.0 | 4.11e-01 | 95.2% | 74.1% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.56 | 38.0 | 3.78e-01 | 85.7% | 67.4% |
| 1k90B03 | 1.20.140.60 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.56 | 47.0 | 4.22e-01 | 91.7% | 68.7% |
| 5a0uA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.55 | 45.0 | 2.61e-01 | 88.1% | 21.7% |
| 1sj7C00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.54 | 46.0 | 3.71e-01 | 94.0% | 48.2% |
| 2b1eA01 | 1.20.58.1150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 38.0 | 3.87e-01 | 92.9% | 73.3% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 46.0 | 4.34e-01 | 95.2% | 79.4% |
| 7e84A02 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.53 | 43.0 | 3.61e-01 | 85.7% | 82.0% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 4.12e-01 | 90.5% | 84.3% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 4.12e-01 | 92.9% | 76.4% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 45.0 | 4.23e-01 | 95.2% | 83.7% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.52 | 44.0 | 4.04e-01 | 91.7% | 98.1% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 44.0 | 3.98e-01 | 96.4% | 88.3% |
| 4o8sA02 | 1.20.58.1790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain | 0.52 | 42.0 | 3.94e-01 | 89.3% | 92.5% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.51 | 37.0 | 3.27e-01 | 78.6% | 73.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3731082 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.76 | 52.0 | 5.53e-01 | 94.0% | 78.7% |
| 3914072 | 633.23.1.19 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › TMEM37 | 0.76 | 52.0 | 3.94e-01 | 70.2% | 62.8% |
| 4947260 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.75 | 52.0 | 5.32e-01 | 94.0% | 73.8% |
| 4972182 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.75 | 51.0 | 5.55e-01 | 94.0% | 84.3% |
| 3862038 | 103.1.1.142 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_Sid-3 | 0.74 | 52.0 | 5.49e-01 | 91.7% | 81.3% |
| 4978312 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.73 | 50.0 | 5.42e-01 | 94.0% | 84.3% |
| 3225484 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.72 | 50.0 | 5.44e-01 | 95.2% | 85.7% |
| 3932069 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.72 | 49.0 | 5.17e-01 | 94.0% | 78.7% |
| 4999686 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.71 | 49.0 | 5.13e-01 | 94.0% | 78.7% |
| 4984419 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.71 | 53.0 | 3.78e-01 | 79.8% | 66.1% |
| 3270441 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.70 | 49.0 | 5.22e-01 | 94.0% | 81.3% |
| 5072449 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.69 | 48.0 | 4.76e-01 | 90.5% | 67.8% |
| 2898272 | 3812.1.1.1 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E | 0.67 | 48.0 | 5.21e-01 | 92.9% | 87.5% |
| 3267491 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.67 | 47.0 | 5.11e-01 | 94.0% | 87.1% |
| 3480252 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.67 | 48.0 | 5.08e-01 | 95.2% | 84.0% |
| 1487362 | 3930.2.1.1 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer › Dicer_PBD | 0.66 | 45.0 | 4.06e-01 | 92.9% | 50.4% |
| 4159500 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.66 | 46.0 | 4.60e-01 | 94.0% | 71.8% |
| 4989157 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.65 | 41.0 | 3.87e-01 | 70.2% | 53.0% |
| 3731180 | 2004.1.1.420 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, TIP49 | 0.64 | 43.0 | 2.97e-01 | 70.2% | 32.0% |
| 4001550 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 46.0 | 4.80e-01 | 89.3% | 86.7% |
| 3938199 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 48.0 | 3.74e-01 | 94.0% | 38.9% |
| 4301891 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.62 | 54.0 | 3.79e-01 | 100.0% | 65.4% |
| 3279209 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.61 | 57.0 | 4.39e-01 | 100.0% | 48.0% |
| 4174467 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 48.0 | 4.69e-01 | 96.4% | 81.1% |
| 4030787 | 605.1.1.303 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Terminase_4 | 0.59 | 52.0 | 4.93e-01 | 100.0% | 90.0% |
| 3634447 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.59 | 40.0 | 3.76e-01 | 92.9% | 56.2% |
| 4021885 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.58 | 50.0 | 3.71e-01 | 100.0% | 85.3% |
| 4957624 | 5045.1.1.0 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A | 0.58 | 45.0 | 3.44e-01 | 84.5% | 46.0% |
| 3761667 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 44.0 | 4.49e-01 | 95.2% | 86.3% |
| 3219672 | 601.1.2.79 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126_like | 0.57 | 50.0 | 3.87e-01 | 100.0% | 64.6% |
| 3648942 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.57 | 48.0 | 3.93e-01 | 92.9% | 75.5% |
| 3733651 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.56 | 49.0 | 4.05e-01 | 96.4% | 78.0% |
| 3693675 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 39.0 | 3.33e-01 | 71.4% | 62.2% |
| 3232751 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.56 | 47.0 | 3.35e-01 | 97.6% | 46.7% |
| 3944915 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.55 | 48.0 | 3.52e-01 | 100.0% | 46.9% |
| 4018653 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 48.0 | 3.89e-01 | 92.9% | 64.0% |
| 3920492 | 109.4.1.1665 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30377 | 0.55 | 49.0 | 3.23e-01 | 100.0% | 24.1% |
| 4950248 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.55 | 49.0 | 4.72e-01 | 98.8% | 100.0% |
| 3503534 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.55 | 41.0 | 3.47e-01 | 94.0% | 46.9% |
| 4680153 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.53 | 44.0 | 3.82e-01 | 96.4% | 86.4% |
| 3688131 | 109.4.1.1758 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dopey_N, TPR_DOP1_M | 0.53 | 46.0 | 2.57e-01 | 100.0% | 13.5% |
| 3287687 | 633.23.1.7 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DUF5336 | 0.52 | 45.0 | 3.97e-01 | 96.4% | 97.6% |
| 3308779 | 4982.1.1.3 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › Tic110 | 0.52 | 46.0 | 3.94e-01 | 100.0% | 68.6% |
| 3179505 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.52 | 43.0 | 3.65e-01 | 96.4% | 91.6% |
| 3782650 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.52 | 43.0 | 3.94e-01 | 94.0% | 74.8% |
| 3171895 | 193.1.1.11 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CDC24 | 0.51 | 40.0 | 3.44e-01 | 90.5% | 78.1% |
| 3670337 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 46.0 | 4.54e-01 | 100.0% | 96.7% |