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IMGVR_UViG_3300001594_001369-3300001594-Draft_100233056
Arc-VirIMGVR_UViG_3300001594_001369-3300001594-Draft_100233056
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-89
Domain cluster:
rep: SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00304__D401-473
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.72 | 48.0 | 5.05e-01 | 78.6% | 74.4% |
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.71 | 53.0 | 3.98e-01 | 77.4% | 81.4% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.70 | 49.0 | 4.68e-01 | 72.6% | 89.9% |
| 6ztgA01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.68 | 43.0 | 4.59e-01 | 72.6% | 73.3% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.66 | 47.0 | 4.71e-01 | 77.4% | 72.1% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.65 | 44.0 | 4.62e-01 | 70.2% | 98.7% |
| 3hz7A00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.64 | 48.0 | 5.11e-01 | 77.4% | 98.6% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 43.0 | 4.43e-01 | 70.2% | 96.3% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 45.0 | 4.25e-01 | 75.0% | 94.2% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 3.78e-01 | 75.0% | 45.3% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 51.0 | 4.03e-01 | 89.3% | 100.0% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.61 | 52.0 | 4.68e-01 | 91.7% | 78.9% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 41.0 | 3.73e-01 | 71.4% | 77.6% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 40.0 | 3.86e-01 | 70.2% | 99.0% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 42.0 | 4.01e-01 | 83.3% | 64.3% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 42.0 | 4.07e-01 | 76.2% | 73.7% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.58 | 41.0 | 3.62e-01 | 75.0% | 82.0% |
| 7e6gA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 40.0 | 3.27e-01 | 71.4% | 78.5% |
| 2n8lA00 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.57 | 41.0 | 3.26e-01 | 77.4% | 74.3% |
| 3pxpA02 | 3.30.450.180 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 41.0 | 3.16e-01 | 76.2% | 86.9% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 40.0 | 3.90e-01 | 83.3% | 66.0% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 39.0 | 3.04e-01 | 75.0% | 42.9% |
| 2ldkA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 41.0 | 3.29e-01 | 78.6% | 78.5% |
| 5flmA02 | 3.30.1360.140 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.55 | 44.0 | 3.83e-01 | 89.3% | 72.1% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 40.0 | 4.05e-01 | 78.6% | 82.9% |
| 5o5cB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 41.0 | 3.58e-01 | 84.5% | 52.3% |
| 2pxxA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 45.0 | 3.39e-01 | 92.9% | 83.1% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.54 | 38.0 | 3.31e-01 | 76.2% | 100.0% |
| 2xrnA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 42.0 | 3.43e-01 | 90.5% | 83.1% |
| 2f5gA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.53 | 36.0 | 3.14e-01 | 70.2% | 81.5% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.53 | 42.0 | 3.60e-01 | 89.3% | 93.8% |
| 4lecA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 42.0 | 3.20e-01 | 88.1% | 83.2% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 43.0 | 3.70e-01 | 92.9% | 94.9% |
| 6zxbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 35.0 | 3.03e-01 | 70.2% | 89.6% |
| 5u1xA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.51 | 41.0 | 2.96e-01 | 91.7% | 90.9% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008041 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 56.0 | 4.65e-01 | 70.2% | 92.6% |
| None | — | 0.74 | 52.0 | 3.65e-01 | 72.6% | 78.8% | |
| 4943245 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.74 | 47.0 | 4.05e-01 | 77.4% | 42.3% |
| 5015050 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.74 | 52.0 | 3.69e-01 | 73.8% | 76.1% |
| 4934172 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.73 | 51.0 | 5.57e-01 | 83.3% | 87.1% |
| 5054002 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.71 | 49.0 | 5.01e-01 | 76.2% | 73.8% |
| 4937181 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.71 | 47.0 | 4.85e-01 | 77.4% | 71.2% |
| 5015712 | 2003.1.5.54 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 | 0.71 | 50.0 | 3.50e-01 | 73.8% | 75.4% |
| 5023791 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.70 | 52.0 | 4.73e-01 | 77.4% | 60.0% |
| 4996402 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.70 | 47.0 | 4.50e-01 | 77.4% | 60.0% |
| 4992480 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.70 | 46.0 | 4.57e-01 | 77.4% | 63.3% |
| 4997605 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.70 | 46.0 | 4.38e-01 | 77.4% | 57.0% |
| 4113237 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.69 | 52.0 | 4.98e-01 | 83.3% | 69.5% |
| 4931923 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.69 | 50.0 | 5.17e-01 | 76.2% | 100.0% |
| 3602264 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 45.0 | 4.51e-01 | 77.4% | 65.9% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 50.0 | 4.62e-01 | 77.4% | 61.0% |
| 3695303 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.68 | 48.0 | 4.10e-01 | 79.8% | 47.7% |
| 4062392 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.67 | 52.0 | 4.90e-01 | 82.1% | 86.0% |
| 4999757 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.66 | 47.0 | 3.38e-01 | 73.8% | 27.5% |
| 4045503 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.66 | 45.0 | 4.77e-01 | 70.2% | 98.7% |
| 4399086 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.66 | 49.0 | 4.95e-01 | 78.6% | 95.3% |
| 5033448 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.66 | 48.0 | 4.75e-01 | 77.4% | 90.0% |
| 4044550 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 47.0 | 4.84e-01 | 75.0% | 97.5% |
| 4223968 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 47.0 | 4.84e-01 | 75.0% | 96.2% |
| 5073850 | 304.43.1.6 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › FLAD1_M | 0.65 | 44.0 | 4.63e-01 | 71.4% | 78.7% |
| 4534213 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 50.0 | 4.98e-01 | 81.0% | 97.6% |
| 4322692 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.65 | 41.0 | 4.25e-01 | 70.2% | 67.5% |
| 3282322 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.64 | 51.0 | 4.55e-01 | 83.3% | 78.3% |
| 4230863 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.64 | 52.0 | 4.70e-01 | 85.7% | 79.1% |
| 4993483 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 52.0 | 4.81e-01 | 88.1% | 77.1% |
| 4317294 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 46.0 | 3.30e-01 | 78.6% | 45.7% |
| 4669669 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.63 | 51.0 | 4.68e-01 | 86.9% | 70.0% |
| 3596068 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.63 | 46.0 | 4.49e-01 | 76.2% | 71.1% |
| 4217144 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.63 | 41.0 | 4.22e-01 | 71.4% | 70.0% |
| 4413471 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.62 | 42.0 | 4.47e-01 | 70.2% | 97.3% |
| 4972691 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.62 | 46.0 | 4.40e-01 | 79.8% | 88.0% |
| 4629526 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.62 | 57.0 | 3.77e-01 | 98.8% | 42.6% |
| 3726634 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.62 | 43.0 | 4.44e-01 | 73.8% | 81.2% |
| 5080958 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.62 | 41.0 | 4.33e-01 | 92.9% | 77.3% |
| 4193755 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.61 | 42.0 | 4.40e-01 | 70.2% | 98.7% |
| 4982133 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.61 | 43.0 | 4.43e-01 | 73.8% | 96.2% |
| 4412539 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.61 | 55.0 | 4.29e-01 | 98.8% | 85.7% |
| 5028640 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.61 | 41.0 | 3.76e-01 | 70.2% | 89.6% |
| 4394754 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.61 | 45.0 | 4.48e-01 | 79.8% | 90.0% |
| 4078130 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.61 | 45.0 | 3.22e-01 | 79.8% | 54.2% |
| 4993816 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 52.0 | 4.32e-01 | 98.8% | 84.7% |
| 4130731 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.58 | 48.0 | 3.97e-01 | 89.3% | 80.0% |
| 3163632 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.58 | 43.0 | 4.46e-01 | 79.8% | 86.3% |
| 4098707 | 304.159.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C | 0.58 | 39.0 | 3.74e-01 | 70.2% | 63.0% |
| 3312923 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 42.0 | 4.08e-01 | 78.6% | 72.6% |
| 3929061 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.57 | 42.0 | 4.07e-01 | 78.6% | 71.6% |
| 4469636 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 38.0 | 3.86e-01 | 71.4% | 69.4% |
| 3642333 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 40.0 | 3.12e-01 | 73.8% | 98.9% |
| 1182828 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.55 | 41.0 | 3.09e-01 | 78.6% | 92.1% |
| 3367362 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 39.0 | 4.04e-01 | 78.6% | 78.8% |
| 5001058 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 37.0 | 3.13e-01 | 70.2% | 66.4% |
| 3493241 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 35.0 | 2.80e-01 | 84.5% | 31.4% |
| 4629319 | 304.55.1.13 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase | 0.53 | 39.0 | 3.54e-01 | 81.0% | 62.5% |
| 4946421 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.53 | 38.0 | 2.27e-01 | 77.4% | 11.4% |
| 5049089 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 43.0 | 3.84e-01 | 90.5% | 83.3% |
| 4496753 | 241.1.1.8 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2170 | 0.51 | 38.0 | 3.39e-01 | 81.0% | 56.2% |