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IMGVR_UViG_3300001605_004541-3300001605-Draft_1001429415
Arc-VirIMGVR_UViG_3300001605_004541-3300001605-Draft_1001429415
Identity
- Kingdom:
- archaea
Quality
94.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-43
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.77 | 57.0 | 4.67e-01 | 81.4% | 70.0% |
| 3hryA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.71 | 56.0 | 5.43e-01 | 97.7% | 77.6% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.71 | 51.0 | 3.52e-01 | 79.1% | 23.0% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 50.0 | 3.90e-01 | 76.7% | 35.4% |
| 2c4kA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 44.0 | 2.97e-01 | 72.1% | 35.9% |
| 5mp7A01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 42.0 | 2.93e-01 | 72.1% | 37.0% |
| 1xhbA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.62 | 51.0 | 3.25e-01 | 100.0% | 43.7% |
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 50.0 | 3.76e-01 | 100.0% | 50.8% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.59 | 47.0 | 3.23e-01 | 100.0% | 45.4% |
| 1wyuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 45.0 | 2.82e-01 | 86.0% | 15.6% |
| 1whnA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 39.0 | 3.01e-01 | 72.1% | 58.4% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.56 | 46.0 | 3.37e-01 | 100.0% | 64.9% |
| 2gs8A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.55 | 46.0 | 3.31e-01 | 100.0% | 60.0% |
| 2j9lF01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.55 | 39.0 | 3.45e-01 | 81.4% | 78.1% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.55 | 41.0 | 3.17e-01 | 88.4% | 36.1% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 42.0 | 3.27e-01 | 93.0% | 33.9% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 3.08e-01 | 74.4% | 43.9% |
| 2pg4A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.58e-01 | 97.7% | 61.5% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.54 | 40.0 | 2.90e-01 | 81.4% | 57.1% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.19e-01 | 100.0% | 37.6% |
| 1zodA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 37.0 | 2.71e-01 | 74.4% | 87.9% |
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.54 | 45.0 | 3.18e-01 | 100.0% | 79.5% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.53 | 44.0 | 2.89e-01 | 100.0% | 65.2% |
| 1u9yA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 44.0 | 3.08e-01 | 95.3% | 50.7% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.12e-01 | 90.7% | 47.0% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 3.12e-01 | 100.0% | 39.0% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.34e-01 | 100.0% | 51.0% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.64e-01 | 100.0% | 90.9% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 37.0 | 3.13e-01 | 88.4% | 42.5% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.51 | 40.0 | 3.56e-01 | 95.3% | 59.2% |
| 2obpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.49e-01 | 100.0% | 71.6% |
| 6pcoC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 2.98e-01 | 100.0% | 42.4% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039168 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.81 | 58.0 | 4.47e-01 | 79.1% | 34.7% |
| 3939311 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 38.0 | 2.78e-01 | 88.4% | 20.0% |
| 4947849 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.64 | 47.0 | 3.78e-01 | 83.7% | 36.8% |
| 4384457 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.61 | 48.0 | 3.63e-01 | 100.0% | 53.1% |
| 3286928 | 245.2.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB | 0.60 | 40.0 | 3.85e-01 | 97.7% | 56.4% |
| 3641903 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.60 | 46.0 | 4.73e-01 | 90.7% | 100.0% |
| 6909 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.60 | 46.0 | 4.42e-01 | 95.3% | 89.1% |
| 5077595 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 48.0 | 3.68e-01 | 93.0% | 48.2% |
| 5012277 | 101.1.2.904 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_38 | 0.60 | 38.0 | 3.16e-01 | 81.4% | 37.3% |
| 3295499 | 263.1.1.6 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 | 0.59 | 42.0 | 4.10e-01 | 86.0% | 69.1% |
| 4955571 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.59 | 40.0 | 2.91e-01 | 72.1% | 27.0% |
| 3818050 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.58 | 45.0 | 3.97e-01 | 100.0% | 53.8% |
| 5012824 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.58 | 38.0 | 3.42e-01 | 83.7% | 50.0% |
| 3989790 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.58 | 41.0 | 4.00e-01 | 79.1% | 72.0% |
| 3369362 | 3922.1.1.161 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › EIN3_N | 0.58 | 44.0 | 4.10e-01 | 95.3% | 66.7% |
| 4932931 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 39.0 | 2.84e-01 | 72.1% | 28.2% |
| 5054872 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 39.0 | 2.90e-01 | 72.1% | 29.5% |
| 4889887 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.57 | 38.0 | 2.69e-01 | 79.1% | 19.9% |
| 3207704 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.57 | 41.0 | 4.11e-01 | 88.4% | 80.0% |
| 4383876 | 5.1.11.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40, Beta-prop_NOL10_N | 0.57 | 45.0 | 2.66e-01 | 90.7% | 21.9% |
| 4936127 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 37.0 | 3.14e-01 | 74.4% | 38.7% |
| 3318217 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.57 | 44.0 | 3.88e-01 | 100.0% | 53.8% |
| 3428560 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.57 | 45.0 | 4.33e-01 | 100.0% | 80.0% |
| 3865234 | 7581.1.1.22 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt | 0.57 | 44.0 | 2.79e-01 | 97.7% | 61.8% |
| 5079059 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.57 | 40.0 | 3.42e-01 | 76.7% | 45.3% |
| 3961156 | 7581.1.1.19 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N+Thiolase_C | 0.56 | 49.0 | 3.00e-01 | 100.0% | 76.1% |
| 4999987 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 2.97e-01 | 81.4% | 33.3% |
| 3322159 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.56 | 43.0 | 3.43e-01 | 97.7% | 71.3% |
| 5010522 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 3.43e-01 | 86.0% | 75.3% |
| 5078958 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.56 | 38.0 | 2.81e-01 | 72.1% | 29.5% |
| 3219380 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.55 | 42.0 | 4.37e-01 | 83.7% | 92.1% |
| 3931636 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 40.0 | 3.64e-01 | 79.1% | 56.7% |
| 4307403 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 43.0 | 3.13e-01 | 86.0% | 39.2% |
| 3781870 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.55 | 45.0 | 3.73e-01 | 100.0% | 48.2% |
| 5058722 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.55 | 38.0 | 2.77e-01 | 72.1% | 28.2% |
| 5069954 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.54 | 46.0 | 3.44e-01 | 100.0% | 50.0% |
| 3679276 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.54 | 42.0 | 3.88e-01 | 100.0% | 65.1% |
| 3835025 | 5086.1.1.204 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PHM7_cyt | 0.54 | 38.0 | 3.47e-01 | 79.1% | 55.4% |
| 4023453 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.54 | 37.0 | 3.29e-01 | 79.1% | 44.3% |
| 2782521 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.54 | 41.0 | 4.01e-01 | 100.0% | 80.0% |
| 3771989 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.54 | 39.0 | 2.77e-01 | 79.1% | 30.4% |
| 4274656 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.53 | 42.0 | 3.12e-01 | 100.0% | 30.7% |
| 4975021 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 43.0 | 3.55e-01 | 97.7% | 86.4% |
| 3423636 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.53 | 40.0 | 3.38e-01 | 100.0% | 46.3% |
| 4995434 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.53 | 38.0 | 2.94e-01 | 81.4% | 33.3% |
| 6784 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.52 | 42.0 | 3.52e-01 | 95.3% | 49.4% |
| 5031727 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.52 | 40.0 | 3.35e-01 | 97.7% | 60.0% |
| 3877589 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.52 | 35.0 | 3.25e-01 | 74.4% | 48.3% |
| 4099294 | 304.11.1.2 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT | 0.52 | 36.0 | 3.11e-01 | 76.7% | 40.0% |
| 4989275 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 3.07e-01 | 95.3% | 36.9% |
| 5556 | 242.1.1.4 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Endonuc_subdom | 0.52 | 37.0 | 3.05e-01 | 88.4% | 37.8% |
| 4329890 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 36.0 | 2.47e-01 | 81.4% | 21.3% |
| 4653037 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 42.0 | 3.09e-01 | 93.0% | 41.7% |
| 4115581 | 304.11.1.2 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT | 0.51 | 36.0 | 3.13e-01 | 79.1% | 41.3% |
| 3164240 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 39.0 | 3.31e-01 | 93.0% | 50.0% |
| 4261796 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.16e-01 | 90.7% | 48.0% |
| 4971836 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.51 | 41.0 | 3.20e-01 | 100.0% | 73.6% |
| 4603329 | 101.1.2.108 ↗ | alpha arrays › HTH › HTH › winged helix domain › PuR_N | 0.51 | 43.0 | 3.59e-01 | 100.0% | 96.2% |
| 4937616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.83e-01 | 100.0% | 68.3% |
| 5066879 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.50 | 41.0 | 3.09e-01 | 93.0% | 41.7% |
| 4945099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 41.0 | 2.98e-01 | 93.0% | 44.8% |
| 3803258 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.50 | 37.0 | 3.80e-01 | 83.7% | 85.0% |