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IMGVR_UViG_3300001784_000266-3300001784-JGI20225J20221_100005494
Arc-VirIMGVR_UViG_3300001784_000266-3300001784-JGI20225J20221_100005494
Identity
- Kingdom:
- archaea
Quality
81.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-69
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 3.77e-01 | 74.6% | 66.9% |
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 46.0 | 3.79e-01 | 76.2% | 89.9% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 38.0 | 3.26e-01 | 79.4% | 39.8% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 39.0 | 3.44e-01 | 77.8% | 47.3% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 36.0 | 3.18e-01 | 76.2% | 40.2% |
| 4uoyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 41.0 | 2.96e-01 | 79.4% | 58.5% |
| 3iwaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 39.0 | 2.95e-01 | 74.6% | 88.5% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 42.0 | 3.29e-01 | 84.1% | 51.1% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 37.0 | 3.25e-01 | 71.4% | 62.8% |
| 3icsA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 38.0 | 2.71e-01 | 74.6% | 90.3% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.49e-01 | 93.7% | 72.3% |
| 3tqlA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 42.0 | 3.46e-01 | 96.8% | 96.8% |
| 6qlyA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.51 | 38.0 | 3.40e-01 | 84.1% | 61.9% |
| 3r1wA00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.51 | 35.0 | 2.56e-01 | 73.0% | 78.9% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3009971 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 36.0 | 3.26e-01 | 79.4% | 36.4% |
| 3691414 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.61 | 42.0 | 3.51e-01 | 71.4% | 44.5% |
| 4959289 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.60 | 43.0 | 3.77e-01 | 76.2% | 60.0% |
| 5054405 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.60 | 43.0 | 3.68e-01 | 76.2% | 57.0% |
| 3250991 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.58 | 44.0 | 3.14e-01 | 82.5% | 57.9% |
| 3929254 | 109.4.1.139 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hyccin | 0.57 | 48.0 | 3.11e-01 | 95.2% | 87.2% |
| 3219908 | 109.4.1.80 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 | 0.57 | 49.0 | 3.61e-01 | 96.8% | 55.3% |
| 3382127 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 2.98e-01 | 100.0% | 19.1% |
| 3474327 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.56 | 44.0 | 2.70e-01 | 93.7% | 84.0% |
| 5049486 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.56 | 39.0 | 2.87e-01 | 74.6% | 90.6% |
| 3270651 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.56 | 47.0 | 3.05e-01 | 98.4% | 34.3% |
| 3241694 | 109.4.1.1367 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26723 | 0.55 | 46.0 | 2.82e-01 | 96.8% | 34.2% |
| 3286007 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.55 | 45.0 | 3.08e-01 | 95.2% | 23.9% |
| 3378555 | 4133.1.1.2 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 | 0.55 | 39.0 | 2.85e-01 | 76.2% | 27.6% |
| 139279 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 37.0 | 3.25e-01 | 71.4% | 62.8% |
| 5034348 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.54 | 45.0 | 2.61e-01 | 93.7% | 74.7% |
| 5049128 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.53 | 38.0 | 2.88e-01 | 79.4% | 82.3% |
| 4119221 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.53 | 39.0 | 3.87e-01 | 77.8% | 96.9% |
| 3257678 | 5000.4.1.0 ↗ | alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain | 0.53 | 43.0 | 2.89e-01 | 93.7% | 58.9% |
| 1323525 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.53 | 38.0 | 2.61e-01 | 76.2% | 31.1% |
| 3927350 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 3.06e-01 | 95.2% | 69.1% |
| 160255 | 156.1.1.1 ↗ | alpha duplicates or obligate multimers › Ribosomal protein L7/12, oligomerisation (N-terminal) domain › Ribosomal protein L7/12, oligomerisation (N-terminal) domain › Ribosomal protein L7/12, oligomerisation (N-terminal) domain › Ribosomal_L12_N | 0.53 | 38.0 | 3.81e-01 | 79.4% | 88.1% |
| 4530180 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.53 | 39.0 | 3.09e-01 | 79.4% | 69.2% |
| 3741610 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 44.0 | 3.13e-01 | 100.0% | 41.1% |
| 3447438 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 44.0 | 3.71e-01 | 95.2% | 80.0% |
| 3576207 | 109.4.1.139 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hyccin | 0.52 | 41.0 | 3.05e-01 | 88.9% | 51.7% |
| 5064846 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.52 | 41.0 | 2.95e-01 | 87.3% | 93.8% |
| 3852376 | 109.4.1.80 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 | 0.52 | 43.0 | 3.30e-01 | 95.2% | 60.0% |
| 3270487 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 35.0 | 2.93e-01 | 71.4% | 77.3% |
| 4025349 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.52 | 36.0 | 2.85e-01 | 73.0% | 40.8% |
| 4026266 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.51 | 38.0 | 2.66e-01 | 85.7% | 80.0% |
| 5030935 | 2008.1.1.39 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-BglII | 0.51 | 35.0 | 2.64e-01 | 73.0% | 78.9% |
| 3441766 | 109.4.1.1559 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tic110 | 0.51 | 42.0 | 2.80e-01 | 93.7% | 32.0% |
| 4025452 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 35.0 | 2.91e-01 | 71.4% | 47.8% |
| 4022541 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.51 | 41.0 | 2.78e-01 | 92.1% | 68.5% |
| 3859550 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.50 | 35.0 | 2.79e-01 | 71.4% | 52.5% |
| 3823306 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.50 | 38.0 | 3.18e-01 | 84.1% | 91.3% |
D2
high
residues 78-146
Domain cluster:
rep: MK449010.1__QBX32046.1__Javan90_0052__00003__D34-98