←Back to structures

IMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041392

Arc-Vir

IMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041392

Identity

Kingdom:
archaea

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-146
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 35.0 5.00e-01 71.5% 92.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 34.0 4.87e-01 71.5% 92.4%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 33.0 4.92e-01 70.8% 100.0%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 37.0 4.99e-01 74.5% 97.3%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 33.0 4.72e-01 73.0% 100.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 34.0 4.59e-01 72.3% 96.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.77e-01 100.0% 100.0%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.62 36.0 4.31e-01 73.0% 84.9%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 32.0 4.15e-01 73.7% 87.8%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 33.0 3.80e-01 73.7% 76.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 32.0 3.81e-01 72.3% 81.3%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 29.0 3.60e-01 74.5% 83.7%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.54 25.0 2.81e-01 72.3% 52.9%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 25.0 2.88e-01 83.2% 57.8%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.59e-01 73.7% 82.5%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 32.0 3.65e-01 73.0% 83.2%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 33.0 3.64e-01 82.5% 81.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.78 37.0 4.68e-01 71.5% 74.1%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.76 35.0 4.65e-01 71.5% 77.5%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.76 35.0 5.15e-01 70.8% 95.4%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 36.0 5.22e-01 72.3% 100.0%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.74 34.0 5.06e-01 71.5% 98.4%
4123180 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.74 35.0 4.67e-01 71.5% 82.7%
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.73 35.0 4.29e-01 72.3% 70.0%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.70 32.0 4.82e-01 74.5% 100.0%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 40.0 5.14e-01 97.8% 97.5%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.67 34.0 4.46e-01 73.0% 87.0%
4380345 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.65 39.0 4.82e-01 92.7% 95.3%
3942526 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.61 36.0 4.45e-01 93.4% 92.9%
3740204 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.61 31.0 3.98e-01 70.8% 81.2%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.60 32.0 3.97e-01 71.5% 83.5%
3948410 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.58 26.0 3.09e-01 75.2% 61.1%
3256018 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 30.0 3.68e-01 73.7% 77.8%
3199908 11.1.1.207 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM 0.52 32.0 3.45e-01 75.2% 71.3%
3066545 11.1.4.16 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw 0.51 23.0 2.37e-01 70.1% 39.7%
D2 high residues 154-320
PDB
Domain cluster: rep: KR093637.1__AKI27556.1__X__00017__D1-33_82-122_175-278
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 45.0 5.16e-01 93.4% 86.3%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 47.0 5.56e-01 71.3% 100.0%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 39.0 5.00e-01 85.6% 94.9%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 37.0 4.93e-01 88.0% 100.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 22.0 3.35e-01 85.0% 74.6%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 37.0 4.68e-01 85.6% 99.0%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 34.0 4.14e-01 88.6% 82.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 37.0 4.32e-01 85.6% 90.4%
4hspA00 2.40.50.870 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function (DUF3299) 0.58 48.0 5.04e-01 85.6% 96.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4220176 2.1.1.289 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon, Rep-A_N 0.67 45.0 3.85e-01 70.7% 42.6%
5016162 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 45.0 5.18e-01 75.4% 93.3%
3242400 2.1.1.119 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.65 49.0 5.25e-01 96.4% 89.0%
5025628 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 42.0 5.09e-01 93.4% 98.2%
3625857 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 45.0 5.00e-01 77.8% 90.8%
3356276 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 44.0 4.98e-01 71.9% 92.0%
3210094 2.1.1.289 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon, Rep-A_N 0.64 43.0 3.60e-01 70.1% 40.0%
3441179 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.63 43.0 4.94e-01 75.4% 93.6%
3601825 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 39.0 4.69e-01 94.6% 90.4%
3278700 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 35.0 3.65e-01 89.8% 56.9%
3604100 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 4.46e-01 98.8% 72.5%