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IMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041414
Arc-VirIMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041414
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 216-334
Domain cluster:
rep: IMGVR_UViG_2802429591_000003-2802429591-2805863863__D225-234_253-357
D2
medium
residues 5-96
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.70 | 65.0 | 5.99e-01 | 100.0% | 93.9% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 56.0 | 5.12e-01 | 98.9% | 68.0% |
| 4z85A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 58.0 | 4.52e-01 | 98.9% | 60.4% |
| 3gm8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 43.0 | 4.13e-01 | 84.8% | 62.9% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 39.0 | 3.49e-01 | 100.0% | 45.7% |
| 2g1dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 45.0 | 4.48e-01 | 85.9% | 76.5% |
| 3gdiA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 41.0 | 3.92e-01 | 72.8% | 90.1% |
| 4f80A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 4.14e-01 | 83.7% | 71.0% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.57 | 51.0 | 4.47e-01 | 98.9% | 86.8% |
| 1golA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 44.0 | 3.91e-01 | 81.5% | 58.6% |
| 2d5wA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.57 | 46.0 | 4.27e-01 | 88.0% | 88.0% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 3.95e-01 | 85.9% | 62.0% |
| 5gxxA02 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.56 | 44.0 | 3.72e-01 | 84.8% | 73.2% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 4.10e-01 | 83.7% | 77.2% |
| 2ovsA00 | 2.40.128.380 | Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR | 0.55 | 43.0 | 4.00e-01 | 84.8% | 76.3% |
| 1t7vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 4.04e-01 | 83.7% | 76.7% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.55 | 43.0 | 4.18e-01 | 84.8% | 84.8% |
| 4aqzA00 | 2.60.40.3470 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.70e-01 | 82.6% | 75.4% |
| 4i3gA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 3.89e-01 | 81.5% | 66.7% |
| 7rskA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.98e-01 | 84.8% | 68.8% |
| 6xrbA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.54 | 41.0 | 3.60e-01 | 81.5% | 76.3% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 3.65e-01 | 80.4% | 66.9% |
| 2rttA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 3.88e-01 | 81.5% | 80.0% |
| 4wrnA03 | 2.60.40.4100 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain | 0.53 | 41.0 | 3.37e-01 | 84.8% | 64.9% |
| 8alzB04 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 41.0 | 3.91e-01 | 84.8% | 71.8% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.97e-01 | 81.5% | 85.5% |
| 7o0eA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 43.0 | 4.53e-01 | 98.9% | 98.8% |
| 3hduA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 41.0 | 3.52e-01 | 85.9% | 73.7% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 3.44e-01 | 78.3% | 86.2% |
| 2q1zB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 41.0 | 4.09e-01 | 83.7% | 91.4% |
| 3mfxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 39.0 | 3.65e-01 | 80.4% | 78.9% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 3.86e-01 | 84.8% | 82.7% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 4.09e-01 | 100.0% | 84.4% |
| 6nifA01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.51 | 39.0 | 3.03e-01 | 82.6% | 59.3% |
| 3al9A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 42.0 | 2.72e-01 | 91.3% | 24.9% |
| 4iknA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.50 | 39.0 | 3.80e-01 | 84.8% | 82.1% |
| 1ej8A00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.50 | 44.0 | 3.87e-01 | 98.9% | 70.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954563 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.92 | 81.0 | 8.49e-01 | 97.8% | 98.8% |
| 4031285 | 1.1.13.64 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal | 0.81 | 73.0 | 7.40e-01 | 98.9% | 97.8% |
| 3588729 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.80 | 72.0 | 7.16e-01 | 95.7% | 100.0% |
| 4214150 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.73 | 54.0 | 5.07e-01 | 100.0% | 64.5% |
| 3974181 | 1.1.5.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 | 0.73 | 58.0 | 5.90e-01 | 98.9% | 86.7% |
| 5056905 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.73 | 51.0 | 5.19e-01 | 87.0% | 74.4% |
| 3389361 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 52.0 | 5.19e-01 | 91.3% | 75.8% |
| 169594 | 1.1.13.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 | 0.70 | 65.0 | 5.99e-01 | 100.0% | 93.9% |
| 3972305 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 59.0 | 6.00e-01 | 95.7% | 96.7% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.68 | 59.0 | 5.98e-01 | 95.7% | 96.7% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.68 | 57.0 | 5.79e-01 | 96.7% | 93.3% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.68 | 61.0 | 6.05e-01 | 100.0% | 94.7% |
| 3970827 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 56.0 | 5.81e-01 | 95.7% | 97.6% |
| 3671608 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 47.0 | 4.40e-01 | 84.8% | 60.0% |
| 5012011 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 55.0 | 4.98e-01 | 98.9% | 68.0% |
| 3723694 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 44.0 | 3.70e-01 | 98.9% | 42.7% |
| 3788348 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.64 | 53.0 | 4.96e-01 | 90.2% | 80.0% |
| 3626966 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.62 | 52.0 | 4.91e-01 | 90.2% | 75.5% |
| 3569505 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.62 | 43.0 | 4.26e-01 | 81.5% | 68.4% |
| 3265100 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.62 | 50.0 | 4.65e-01 | 98.9% | 69.6% |
| 134241 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.62 | 43.0 | 4.16e-01 | 84.8% | 64.1% |
| 3592576 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.61 | 43.0 | 3.88e-01 | 83.7% | 53.6% |
| 4371063 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 45.0 | 4.41e-01 | 78.3% | 75.0% |
| 3971176 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 55.0 | 4.39e-01 | 100.0% | 79.4% |
| 3262455 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.60 | 48.0 | 4.68e-01 | 89.1% | 79.0% |
| 3617006 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 44.0 | 4.16e-01 | 88.0% | 68.2% |
| 4012832 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.58 | 50.0 | 5.05e-01 | 100.0% | 94.4% |
| 3608810 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 4.51e-01 | 81.5% | 85.6% |
| 5076110 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.56 | 48.0 | 4.00e-01 | 92.4% | 70.3% |
| 3657532 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.56 | 43.0 | 2.91e-01 | 83.7% | 22.5% |
| 3778547 | 11.1.1.657 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VWA7_4 | 0.55 | 42.0 | 3.61e-01 | 82.6% | 58.1% |
| 4485368 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 43.0 | 3.21e-01 | 83.7% | 51.5% |
| 3266025 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 44.0 | 3.13e-01 | 84.8% | 53.0% |
| 5053323 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 38.0 | 3.63e-01 | 73.9% | 89.6% |
| 4649438 | 331.10.1.2 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › AdoMet_dc | 0.55 | 42.0 | 3.07e-01 | 82.6% | 80.4% |
| 3578732 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.55 | 42.0 | 3.51e-01 | 83.7% | 88.5% |
| 2979129 | 919.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 | 0.53 | 27.0 | 3.47e-01 | 93.5% | 91.3% |
| 3199354 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 44.0 | 2.96e-01 | 98.9% | 23.9% |
| 5016598 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.50 | 38.0 | 3.66e-01 | 81.5% | 81.7% |
D3
medium
residues 101-184
Domain cluster:
rep: NC_047925.1__YP_009798321.1__HOS79_gp108__00101__D161-239
D4
medium
residues 347-407
D5
medium
residues 434-582