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IMGVR_UViG_3300001865_000265-3300001865-JGI2065J20421_1000029127
Arc-VirIMGVR_UViG_3300001865_000265-3300001865-JGI2065J20421_1000029127
Identity
- Kingdom:
- archaea
Quality
66.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-113
Domain cluster:
rep: NC_020847.1__YP_007674052.1__CPAG_00016__00016__D12-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04404.18 best | ERF | 73.7 | 2.30e-20 | 97.2% | 72.5% |
D2
high
residues 231-294
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.68 | 52.0 | 5.33e-01 | 96.9% | 85.5% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 44.0 | 4.12e-01 | 82.8% | 53.0% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.66 | 49.0 | 4.24e-01 | 79.7% | 81.0% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.65 | 54.0 | 4.79e-01 | 92.2% | 75.5% |
| 2p9xA00 | 1.10.1200.200 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 | 0.63 | 52.0 | 4.61e-01 | 100.0% | 63.3% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 46.0 | 4.23e-01 | 81.2% | 64.4% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.62 | 47.0 | 3.77e-01 | 79.7% | 77.8% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.62 | 47.0 | 4.36e-01 | 79.7% | 79.7% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 50.0 | 4.14e-01 | 92.2% | 66.4% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 50.0 | 4.66e-01 | 92.2% | 88.0% |
| 2a8pA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.61 | 45.0 | 3.23e-01 | 79.7% | 81.8% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.61 | 53.0 | 4.41e-01 | 96.9% | 78.1% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 48.0 | 4.52e-01 | 87.5% | 98.7% |
| 1j3eA00 | 1.20.1380.10 | Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain | 0.59 | 49.0 | 4.15e-01 | 96.9% | 83.5% |
| 3rjvA02 | 1.25.40.740 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 40.0 | 4.05e-01 | 70.3% | 73.4% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.58 | 46.0 | 3.19e-01 | 87.5% | 37.3% |
| 4hn9A02 | 1.20.58.2180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 4.54e-01 | 100.0% | 82.4% |
| 4gbjC02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 39.0 | 3.15e-01 | 82.8% | 34.1% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 43.0 | 4.50e-01 | 87.5% | 100.0% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.57 | 40.0 | 4.13e-01 | 90.6% | 82.0% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 4.35e-01 | 85.9% | 96.2% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.56 | 46.0 | 4.29e-01 | 100.0% | 77.9% |
| 1jm6B02 | 1.20.140.20 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain | 0.55 | 46.0 | 3.56e-01 | 96.9% | 62.4% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 43.0 | 3.73e-01 | 93.8% | 55.1% |
| 2k6xA00 | 1.10.220.120 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Sigma-70 factor, region 1.1 | 0.55 | 37.0 | 3.63e-01 | 82.8% | 62.5% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.54 | 49.0 | 3.85e-01 | 100.0% | 50.0% |
| 4e21B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 40.0 | 3.24e-01 | 82.8% | 45.3% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.53 | 46.0 | 3.74e-01 | 100.0% | 53.1% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 3.36e-01 | 98.4% | 35.3% |
| 3k7dA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 46.0 | 3.01e-01 | 93.8% | 24.4% |
| 1wpbB02 | 1.10.3190.10 | Mainly Alpha › Orthogonal Bundle › yfbu gene product, domain 2 › yfbu gene product, domain 2 | 0.52 | 39.0 | 3.29e-01 | 82.8% | 50.0% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.52 | 47.0 | 4.40e-01 | 100.0% | 87.2% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 37.0 | 3.51e-01 | 75.0% | 85.1% |
| 3eu8A00 | 1.50.10.140 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Glycoside hydrolase 144 (GH144) | 0.51 | 43.0 | 2.58e-01 | 93.8% | 14.0% |
| 5gizA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.50 | 41.0 | 3.33e-01 | 93.8% | 89.1% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4181314 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.83 | 57.0 | 3.80e-01 | 82.8% | 19.8% |
| 4975737 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 61.0 | 3.74e-01 | 100.0% | 18.2% |
| 3979567 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.67 | 52.0 | 4.64e-01 | 92.2% | 58.9% |
| 5082139 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.67 | 51.0 | 4.10e-01 | 96.9% | 42.4% |
| 4962931 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.66 | 56.0 | 4.73e-01 | 98.4% | 68.7% |
| 299159 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.65 | 54.0 | 4.64e-01 | 92.2% | 68.9% |
| 4660104 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 50.0 | 5.01e-01 | 82.8% | 83.1% |
| 3238428 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.65 | 48.0 | 4.46e-01 | 79.7% | 62.5% |
| 4029664 | 108.1.1.12 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › p25-alpha | 0.64 | 54.0 | 4.87e-01 | 100.0% | 75.8% |
| 3686477 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.64 | 52.0 | 4.96e-01 | 90.6% | 89.3% |
| 3946046 | 101.1.2.52 ↗ | alpha arrays › HTH › HTH › winged helix domain › KicB | 0.63 | 49.0 | 4.68e-01 | 85.9% | 78.7% |
| 3219669 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.63 | 42.0 | 4.63e-01 | 71.9% | 88.0% |
| 3294434 | 2485.1.1.49 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 | 0.62 | 53.0 | 3.83e-01 | 98.4% | 34.7% |
| 3656535 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.61 | 48.0 | 3.78e-01 | 84.4% | 56.3% |
| 4992091 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.61 | 47.0 | 2.83e-01 | 87.5% | 20.6% |
| 4106251 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.60 | 52.0 | 3.48e-01 | 100.0% | 37.5% |
| 3750557 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.59 | 50.0 | 4.23e-01 | 100.0% | 93.9% |
| 4955202 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.59 | 49.0 | 3.64e-01 | 92.2% | 72.7% |
| 3760689 | 548.1.1.3 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP, Rab_bind | 0.58 | 37.0 | 3.21e-01 | 73.4% | 41.0% |
| 3440587 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.58 | 51.0 | 3.62e-01 | 93.8% | 40.6% |
| 3456467 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.57 | 42.0 | 3.93e-01 | 82.8% | 78.8% |
| 5044421 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.56 | 43.0 | 4.08e-01 | 87.5% | 82.5% |
| 4981587 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.55 | 47.0 | 3.84e-01 | 100.0% | 95.4% |
| 4945549 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.55 | 46.0 | 3.25e-01 | 100.0% | 29.4% |
| 4556742 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.54 | 41.0 | 3.67e-01 | 82.8% | 91.1% |
| 3185582 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.54 | 42.0 | 2.53e-01 | 89.1% | 42.2% |
| 1825015 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.53 | 39.0 | 3.48e-01 | 81.2% | 58.0% |
| 4891290 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.53 | 45.0 | 3.43e-01 | 96.9% | 44.9% |
| 3592236 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 44.0 | 4.06e-01 | 93.8% | 72.9% |
| 4968503 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.53 | 39.0 | 3.04e-01 | 98.4% | 34.7% |
| 3723519 | 321.1.1.10 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 | 0.52 | 38.0 | 2.44e-01 | 79.7% | 46.8% |
| 3544325 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.52 | 38.0 | 3.37e-01 | 79.7% | 91.3% |
| 3169158 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.52 | 36.0 | 3.31e-01 | 75.0% | 66.7% |
| 3708255 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 38.0 | 3.63e-01 | 79.7% | 74.7% |
| 3413518 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.50 | 41.0 | 3.95e-01 | 96.9% | 86.7% |