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IMGVR_UViG_3300001865_000266-3300001865-JGI2065J20421_1000029220
Arc-VirIMGVR_UViG_3300001865_000266-3300001865-JGI2065J20421_1000029220
Identity
- Kingdom:
- archaea
Quality
66.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-74
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.62 | 50.0 | 4.53e-01 | 90.4% | 93.1% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.62 | 44.0 | 3.09e-01 | 75.3% | 43.3% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.56 | 43.0 | 3.37e-01 | 86.3% | 46.6% |
| 1iqzA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.88e-01 | 78.1% | 86.4% |
| 2fuqA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.55 | 41.0 | 2.77e-01 | 83.6% | 58.8% |
| 4k22A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.54 | 40.0 | 3.61e-01 | 82.2% | 71.3% |
| 2htaA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 40.0 | 2.67e-01 | 79.5% | 74.4% |
| 5h4eA01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.53 | 42.0 | 3.10e-01 | 91.8% | 95.7% |
| 7chkB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 41.0 | 3.47e-01 | 86.3% | 63.6% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 41.0 | 4.24e-01 | 98.6% | 92.5% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 40.0 | 2.87e-01 | 93.2% | 87.2% |
| 1eepA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 37.0 | 2.54e-01 | 82.2% | 43.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010676 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.72 | 46.0 | 5.28e-01 | 82.2% | 94.0% |
| 4057802 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 40.0 | 4.83e-01 | 74.0% | 95.6% |
| 5001806 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.67 | 40.0 | 4.71e-01 | 74.0% | 89.6% |
| 3612863 | 3609.1.1.3 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 | 0.67 | 32.0 | 2.30e-01 | 72.6% | 15.5% |
| 4951587 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.67 | 41.0 | 4.74e-01 | 76.7% | 90.0% |
| 4200990 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 41.0 | 4.65e-01 | 76.7% | 90.0% |
| 4083057 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 41.0 | 4.70e-01 | 76.7% | 90.0% |
| 4419456 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.66 | 40.0 | 4.58e-01 | 75.3% | 89.8% |
| 4928679 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 41.0 | 4.64e-01 | 76.7% | 90.0% |
| 4460255 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.66 | 40.0 | 4.58e-01 | 80.8% | 90.0% |
| 5035097 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.65 | 38.0 | 4.62e-01 | 74.0% | 95.6% |
| 4956224 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.65 | 49.0 | 3.47e-01 | 82.2% | 81.7% |
| 4982370 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.64 | 34.0 | 4.15e-01 | 72.6% | 90.0% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.63 | 39.0 | 4.68e-01 | 76.7% | 100.0% |
| 4939553 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.62 | 39.0 | 4.33e-01 | 76.7% | 90.0% |
| 4593896 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.62 | 37.0 | 4.28e-01 | 72.6% | 93.3% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.62 | 37.0 | 4.26e-01 | 72.6% | 93.3% |
| 3420078 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.61 | 46.0 | 2.68e-01 | 82.2% | 16.9% |
| 4976498 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.60 | 42.0 | 4.46e-01 | 79.5% | 90.0% |
| 4939413 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.58 | 37.0 | 4.24e-01 | 75.3% | 96.0% |
| 4170977 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.56 | 42.0 | 3.61e-01 | 82.2% | 92.8% |
| 4232720 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.56 | 40.0 | 3.62e-01 | 76.7% | 69.5% |
| 3680994 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.56 | 42.0 | 2.76e-01 | 82.2% | 31.4% |
| 5077751 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.53 | 37.0 | 3.36e-01 | 74.0% | 81.9% |
| 4260212 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.52 | 37.0 | 3.16e-01 | 76.7% | 66.9% |
| 4483596 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.51 | 40.0 | 2.84e-01 | 87.7% | 42.0% |