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IMGVR_UViG_3300001865_000266-3300001865-JGI2065J20421_1000029257

Arc-Vir

IMGVR_UViG_3300001865_000266-3300001865-JGI2065J20421_1000029257

Identity

Kingdom:
archaea

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-55
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dsmA00 3.30.40.30 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain 0.78 51.0 4.66e-01 94.5% 51.4%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 48.0 4.51e-01 85.5% 56.1%
1wfkA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 49.0 4.38e-01 94.5% 58.4%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 46.0 4.16e-01 100.0% 55.3%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.64 51.0 4.77e-01 92.7% 76.4%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.61 41.0 3.02e-01 70.9% 49.7%
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.61 51.0 4.19e-01 96.4% 64.8%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 3.27e-01 76.4% 60.4%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.60 47.0 4.09e-01 94.5% 69.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 44.0 3.87e-01 78.2% 57.5%
2i71A01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.57 39.0 2.61e-01 70.9% 21.5%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.57 38.0 3.02e-01 70.9% 69.4%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 39.0 2.91e-01 76.4% 51.6%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 42.0 3.07e-01 87.3% 80.5%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.50 34.0 3.37e-01 70.9% 71.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4985875 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 65.0 6.85e-01 81.8% 100.0%
4961820 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 65.0 6.36e-01 100.0% 88.3%
4965846 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 53.0 5.67e-01 81.8% 100.0%
3487873 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 57.0 5.59e-01 92.7% 83.3%
3169402 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 54.0 5.31e-01 100.0% 83.3%
2831825 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.64 51.0 4.89e-01 92.7% 80.9%
3229165 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.64 52.0 4.53e-01 92.7% 64.8%
4958102 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.64 51.0 4.94e-01 100.0% 78.5%
3230236 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 41.0 3.49e-01 74.5% 96.0%
5044477 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 4.30e-01 100.0% 94.0%
3847164 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 49.0 4.36e-01 100.0% 65.9%
3487996 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.58 48.0 4.72e-01 96.4% 94.9%
3715664 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 40.0 3.12e-01 78.2% 32.3%
4244580 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.56 38.0 3.00e-01 70.9% 61.6%
5077240 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.56 44.0 2.82e-01 90.9% 89.4%
5020449 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 38.0 2.76e-01 70.9% 52.0%
3220241 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 37.0 2.28e-01 74.5% 28.6%
3167308 376.1.1.12 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING-like 0.54 43.0 4.09e-01 94.5% 74.3%
3576244 825.1.1.2 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.53 34.0 2.57e-01 70.9% 23.9%
4967168 304.139.1.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR 0.53 39.0 2.41e-01 78.2% 59.7%
3397272 3380.1.1.2 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Fra10Ac1 0.53 39.0 3.30e-01 90.9% 45.8%
3433202 221.1.1.159 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 0.52 35.0 3.48e-01 70.9% 90.0%
3522596 371.1.1.2 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_2 0.51 36.0 2.37e-01 90.9% 17.4%
3212196 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 35.0 2.89e-01 74.5% 45.2%