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IMGVR_UViG_3300001866_000001-3300001866-JGI24729J20445_100003775

Arc-Vir

IMGVR_UViG_3300001866_000001-3300001866-JGI24729J20445_100003775

Identity

Kingdom:
archaea

Quality

79.2 mean pLDDT

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-122
PDB
Domain cluster: rep: IMGVR_UViG_2684622743_000001-2684622743-2685523762__D15-101
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.64 43.0 5.09e-01 99.1% 100.0%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.57 39.0 4.52e-01 100.0% 100.0%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 29.0 3.11e-01 100.0% 60.6%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 29.0 3.03e-01 97.2% 58.6%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 28.0 2.90e-01 96.2% 53.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2984229 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 43.0 5.00e-01 100.0% 92.3%
3516152 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.60 43.0 4.78e-01 100.0% 92.9%
5035358 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 29.0 3.77e-01 86.8% 98.2%
4938684 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.53 36.0 3.97e-01 100.0% 89.4%
4358168 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 33.0 3.31e-01 84.0% 61.8%
5055291 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.52 29.0 3.54e-01 90.6% 95.0%
5024227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 27.0 3.51e-01 81.1% 88.9%
4294893 375.1.1.240 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_Brz 0.50 22.0 2.75e-01 100.0% 63.3%
D2 high residues 126-189
PDB
Domain cluster: rep: IMGVR_UViG_3300029718_000421-3300029718-Ga0245237_100005116__D105-159
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.69 57.0 5.08e-01 100.0% 63.2%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.62 54.0 5.26e-01 98.4% 100.0%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.61 51.0 4.93e-01 96.9% 100.0%
1nrkA03 2.40.30.160 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 45.0 3.72e-01 100.0% 43.4%
1iq0A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 40.0 2.56e-01 76.6% 67.2%
2mhfA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.32e-01 87.5% 79.3%
2yubA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 43.0 3.78e-01 100.0% 81.8%
2c40A00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.52 36.0 2.41e-01 75.0% 46.4%
1ihjA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 41.0 3.75e-01 100.0% 98.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.83 69.0 7.20e-01 98.4% 96.6%
3602932 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.75 53.0 5.87e-01 93.8% 98.0%
2526359 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.66 54.0 5.55e-01 100.0% 100.0%
3398750 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 59.0 5.44e-01 100.0% 95.0%
5075574 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.62 53.0 4.99e-01 100.0% 95.0%
4930449 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.62 53.0 5.09e-01 96.9% 94.7%
4070519 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.61 52.0 4.95e-01 96.9% 98.7%
4975521 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.61 52.0 4.83e-01 100.0% 92.9%
4933166 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.60 51.0 4.80e-01 98.4% 96.2%
4960949 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.60 50.0 4.75e-01 100.0% 95.0%
3970319 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 44.0 4.02e-01 100.0% 57.8%
3603211 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.59 50.0 4.78e-01 100.0% 92.5%
4245082 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.55 43.0 2.99e-01 96.9% 24.8%
3515518 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.52 45.0 3.70e-01 100.0% 50.4%
4054625 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 38.0 2.93e-01 100.0% 31.8%