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IMGVR_UViG_3300001866_000001-3300001866-JGI24729J20445_100003776

Arc-Vir

IMGVR_UViG_3300001866_000001-3300001866-JGI24729J20445_100003776

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-75
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 54.0 4.91e-01 91.5% 98.0%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 60.0 3.94e-01 100.0% 43.4%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 61.0 3.93e-01 100.0% 44.0%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 58.0 3.90e-01 98.6% 31.4%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 47.0 4.69e-01 73.2% 100.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 59.0 3.79e-01 100.0% 39.4%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.66 56.0 4.07e-01 97.2% 84.9%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 54.0 4.77e-01 98.6% 99.1%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.50e-01 97.2% 41.8%
4g3cA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 44.0 3.74e-01 76.1% 75.4%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 54.0 4.93e-01 98.6% 98.0%
5hesA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 44.0 4.23e-01 74.6% 92.6%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 45.0 4.05e-01 77.5% 85.7%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.44e-01 100.0% 41.1%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 48.0 3.38e-01 87.3% 88.6%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 45.0 3.47e-01 81.7% 43.4%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.15e-01 94.4% 56.1%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.27e-01 95.8% 48.1%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 48.0 4.45e-01 97.2% 91.0%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 4.32e-01 93.0% 91.3%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.57 46.0 4.24e-01 93.0% 94.8%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 46.0 3.19e-01 93.0% 38.8%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.55 44.0 3.52e-01 91.5% 49.7%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 46.0 3.17e-01 95.8% 48.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.55 47.0 3.79e-01 100.0% 56.0%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.84e-01 71.8% 88.6%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.55 41.0 3.83e-01 88.7% 64.4%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.54 33.0 3.54e-01 77.5% 70.5%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 3.29e-01 98.6% 38.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.54 39.0 3.85e-01 94.4% 72.5%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 4.18e-01 87.3% 100.0%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 3.84e-01 100.0% 59.4%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.43e-01 90.1% 57.2%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 40.0 3.40e-01 84.5% 58.9%
5b0hA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.52 38.0 3.16e-01 80.3% 58.6%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.51 45.0 3.45e-01 100.0% 99.4%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 39.0 3.63e-01 87.3% 85.3%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 43.0 3.58e-01 100.0% 66.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014686 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.79 58.0 6.44e-01 90.1% 100.0%
3288112 243.1.1.69 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 0.75 64.0 5.60e-01 97.2% 100.0%
3616618 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 62.0 3.85e-01 100.0% 40.5%
3250914 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.68 61.0 3.80e-01 100.0% 41.8%
3411613 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 61.0 3.81e-01 100.0% 41.8%
3932344 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.67 59.0 3.76e-01 97.2% 41.5%
4440945 5.1.3.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.67 60.0 3.89e-01 100.0% 42.2%
3176080 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 56.0 3.41e-01 95.8% 26.4%
3198667 5.1.4.221 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SGL 0.66 59.0 3.77e-01 100.0% 42.0%
4992633 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.65 53.0 5.20e-01 85.9% 96.0%
3247750 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 56.0 3.50e-01 95.8% 26.2%
3698170 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.65 57.0 3.59e-01 100.0% 32.8%
3594326 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.65 53.0 5.15e-01 93.0% 81.2%
1169103 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.65 56.0 3.50e-01 98.6% 25.7%
4479826 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 58.0 3.70e-01 100.0% 25.4%
3633627 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 52.0 4.20e-01 91.5% 99.3%
3960559 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 48.0 3.95e-01 81.7% 45.5%
3483293 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 45.0 2.82e-01 74.6% 24.2%
4566539 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.63 55.0 3.44e-01 97.2% 31.2%
4968138 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.63 54.0 5.06e-01 97.2% 96.7%
3396994 5.1.4.382 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1899, ANAPC4_WD40, WD40_4 0.63 54.0 3.40e-01 97.2% 31.5%
3765357 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.63 54.0 3.41e-01 97.2% 31.6%
4972327 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.62 53.0 4.81e-01 94.4% 100.0%
3890948 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 53.0 3.26e-01 94.4% 17.9%
3702063 331.9.1.5 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.62 47.0 4.12e-01 97.2% 54.1%
4028595 59.1.4.1 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.62 46.0 3.64e-01 80.3% 54.8%
3998243 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.46e-01 97.2% 37.1%
3579989 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.61 54.0 3.45e-01 100.0% 27.5%
3606615 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.61 52.0 4.85e-01 95.8% 75.6%
4927080 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.60 47.0 3.86e-01 91.5% 44.6%
3589339 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.60 49.0 4.52e-01 91.5% 89.5%
3495285 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.59 42.0 3.31e-01 85.9% 35.3%
3709300 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 2.87e-01 95.8% 11.1%
4987226 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 46.0 3.70e-01 88.7% 64.7%
3209928 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.06e-01 97.2% 36.5%
3625247 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 44.0 3.92e-01 84.5% 80.0%
3938022 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.22e-01 100.0% 36.6%
4680157 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 41.0 2.70e-01 77.5% 24.1%
3846916 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.57 42.0 3.65e-01 90.1% 49.6%
4027070 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 50.0 3.59e-01 97.2% 55.1%
4461893 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 48.0 2.86e-01 94.4% 19.7%
4930465 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.57 39.0 4.23e-01 77.5% 86.7%
3513651 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.56 42.0 3.67e-01 85.9% 52.7%
4030034 109.4.1.1140 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 0.55 49.0 3.00e-01 100.0% 26.9%
3449021 109.4.1.1734 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_11 0.55 41.0 2.72e-01 80.3% 53.1%
4978135 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 47.0 3.79e-01 97.2% 69.7%
3390942 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 44.0 3.87e-01 98.6% 57.3%
3283627 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 42.0 3.44e-01 88.7% 42.0%
4927100 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.54 40.0 3.77e-01 80.3% 62.2%
3589620 4312.1.1.11 a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin 0.54 44.0 4.12e-01 91.5% 93.3%
3649700 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 37.0 3.52e-01 88.7% 58.8%
3248749 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 41.0 3.66e-01 98.6% 54.5%
3360656 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.54 40.0 3.40e-01 90.1% 45.3%
6667 4221.1.1.1 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.54 39.0 3.88e-01 94.4% 74.4%
3955637 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 42.0 3.45e-01 90.1% 68.3%
3887265 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 2.80e-01 91.5% 55.7%
4949939 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 44.0 3.60e-01 98.6% 69.7%
4961327 3264.1.1.0 0.52 42.0 3.27e-01 90.1% 95.0%
3199320 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 37.0 3.15e-01 78.9% 47.0%
3264147 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 42.0 2.71e-01 94.4% 23.3%
3631990 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 44.0 3.44e-01 100.0% 63.0%
3807375 109.4.1.1306 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11 0.50 41.0 2.83e-01 98.6% 56.0%
4942258 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.50 40.0 3.22e-01 97.2% 42.9%
4054900 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 44.0 3.45e-01 100.0% 63.9%
D2 high residues 84-263
PDB
D3 medium residues 309-359
PDB
Domain cluster: representative
D4 medium residues 360-432
PDB