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IMGVR_UViG_3300002093_000461-3300002093-C687J26627_10018084
Arc-VirIMGVR_UViG_3300002093_000461-3300002093-C687J26627_10018084
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-113
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01934.23 best | HepT-like | 75.3 | 4.80e-21 | 93.2% | 100.0% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.85 | 80.0 | 7.16e-01 | 100.0% | 92.0% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.74 | 55.0 | 5.63e-01 | 99.0% | 81.0% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.69 | 60.0 | 5.49e-01 | 95.1% | 82.8% |
| 1ivhA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 49.0 | 4.44e-01 | 75.7% | 73.0% |
| 4xpwA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.66 | 58.0 | 5.43e-01 | 100.0% | 87.0% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.65 | 42.0 | 4.07e-01 | 73.8% | 57.9% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.65 | 51.0 | 4.38e-01 | 85.4% | 100.0% |
| 1a7eA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.64 | 55.0 | 5.32e-01 | 98.1% | 83.1% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 47.0 | 5.09e-01 | 79.6% | 95.2% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.64 | 55.0 | 4.25e-01 | 98.1% | 80.2% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.63 | 49.0 | 4.30e-01 | 85.4% | 100.0% |
| 2qkmB01 | 1.10.10.1050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dcp2, box A domain | 0.62 | 38.0 | 3.87e-01 | 84.5% | 60.8% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.62 | 44.0 | 4.20e-01 | 82.5% | 62.1% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 53.0 | 5.12e-01 | 99.0% | 95.8% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.61 | 56.0 | 5.16e-01 | 100.0% | 93.1% |
| 5ejrA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.57 | 43.0 | 3.48e-01 | 78.6% | 95.5% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 39.0 | 3.79e-01 | 82.5% | 64.3% |
| 2o7tA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 41.0 | 3.43e-01 | 75.7% | 66.5% |
| 4nt1A00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.56 | 49.0 | 4.03e-01 | 100.0% | 56.5% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 38.0 | 3.44e-01 | 74.8% | 86.6% |
| 3himA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 38.0 | 3.17e-01 | 73.8% | 67.9% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 36.0 | 3.86e-01 | 87.4% | 84.1% |
| 7zcvA02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 35.0 | 2.78e-01 | 70.9% | 32.9% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.51 | 36.0 | 3.41e-01 | 74.8% | 74.6% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.50 | 39.0 | 3.51e-01 | 82.5% | 81.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602592 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.97 | 94.0 | 8.81e-01 | 100.0% | 86.7% |
| 4988252 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.95 | 92.0 | 8.78e-01 | 100.0% | 90.4% |
| 4950380 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.94 | 90.0 | 8.62e-01 | 100.0% | 89.6% |
| 5073671 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.94 | 90.0 | 8.45e-01 | 100.0% | 86.7% |
| 5074047 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.93 | 89.0 | 8.35e-01 | 100.0% | 86.7% |
| 5080014 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.93 | 86.0 | 8.26e-01 | 98.1% | 87.0% |
| 4950225 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.91 | 86.0 | 8.14e-01 | 100.0% | 87.5% |
| 5077593 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.89 | 84.0 | 7.36e-01 | 100.0% | 87.6% |
| 4987504 | 192.29.1.299 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › HepT-like | 0.88 | 84.0 | 7.95e-01 | 100.0% | 87.4% |
| 4937368 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.88 | 83.0 | 7.44e-01 | 99.0% | 91.9% |
| 5014939 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.88 | 82.0 | 7.27e-01 | 100.0% | 88.8% |
| 5020623 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.87 | 81.0 | 7.70e-01 | 99.0% | 87.4% |
| 5052139 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.87 | 80.0 | 7.16e-01 | 98.1% | 89.9% |
| 2698911 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.86 | 81.0 | 6.96e-01 | 100.0% | 83.6% |
| 4933023 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.86 | 80.0 | 6.98e-01 | 100.0% | 84.7% |
| 5078612 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.86 | 80.0 | 7.16e-01 | 100.0% | 91.4% |
| 5068381 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.85 | 79.0 | 7.49e-01 | 100.0% | 86.7% |
| 5078177 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.85 | 80.0 | 7.02e-01 | 100.0% | 88.1% |
| 5078378 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.84 | 78.0 | 6.90e-01 | 100.0% | 87.6% |
| 4994061 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.84 | 78.0 | 6.90e-01 | 100.0% | 88.8% |
| 5079098 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.83 | 76.0 | 6.94e-01 | 100.0% | 94.1% |
| 5032549 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.77 | 71.0 | 6.57e-01 | 100.0% | 92.3% |
| 4997710 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.72 | 60.0 | 5.72e-01 | 99.0% | 77.5% |
| 3927442 | 601.1.1.95 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › F_actin_bind | 0.71 | 64.0 | 5.84e-01 | 99.0% | 89.6% |
| 4965940 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.70 | 43.0 | 3.77e-01 | 79.6% | 43.4% |
| 5077650 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.69 | 61.0 | 5.70e-01 | 99.0% | 93.1% |
| 4949854 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.68 | 58.0 | 5.68e-01 | 100.0% | 85.0% |
| 3777056 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.67 | 47.0 | 4.17e-01 | 72.8% | 70.0% |
| 3976109 | 632.7.1.61 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › BREX_BrxC_helical | 0.66 | 54.0 | 5.36e-01 | 92.2% | 84.8% |
| 5009867 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.66 | 56.0 | 5.56e-01 | 94.2% | 99.1% |
| 5036206 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.65 | 56.0 | 5.21e-01 | 99.0% | 97.8% |
| 3931278 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.62 | 50.0 | 5.00e-01 | 100.0% | 84.3% |
| 3262519 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 45.0 | 3.72e-01 | 77.7% | 94.2% |
| 1248638 | 603.3.1.1 ↗ | alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein › APP_E2 | 0.61 | 45.0 | 4.43e-01 | 77.7% | 76.4% |
| 3336125 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.59 | 42.0 | 3.58e-01 | 73.8% | 54.1% |
| 4243775 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.59 | 41.0 | 4.58e-01 | 76.7% | 92.5% |
| 3480630 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.58 | 42.0 | 3.61e-01 | 75.7% | 95.8% |
| 3637430 | 109.4.1.37 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 | 0.57 | 47.0 | 3.21e-01 | 88.3% | 80.0% |
| 4546065 | 192.29.1.114 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Mitofilin | 0.57 | 51.0 | 4.51e-01 | 100.0% | 89.6% |
| 3602414 | 2004.1.1.411 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T1RH-like_C | 0.56 | 39.0 | 3.73e-01 | 70.9% | 75.0% |
| 3741976 | 3352.1.1.28 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT+PMT_4TMC | 0.53 | 43.0 | 2.85e-01 | 90.3% | 23.3% |
| 4067307 | 3758.2.1.2 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB | 0.50 | 36.0 | 2.74e-01 | 75.7% | 68.5% |
| 3587523 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.50 | 37.0 | 3.74e-01 | 80.6% | 80.0% |