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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003109
Arc-VirIMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003109
Identity
- Kingdom:
- archaea
Quality
90.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-75
Domain cluster:
rep: KF626668.1__AHB12202.1__Salvo_02__00002__D4-69
D2
high
residues 81-141
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.78 | 70.0 | 5.87e-01 | 100.0% | 91.2% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.74 | 61.0 | 3.89e-01 | 95.1% | 21.9% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 50.0 | 4.26e-01 | 72.1% | 96.0% |
| 3ut4A00 | 1.25.40.750 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 | 0.73 | 57.0 | 4.51e-01 | 100.0% | 41.4% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 50.0 | 3.65e-01 | 72.1% | 41.5% |
| 5d18A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.71 | 62.0 | 4.30e-01 | 98.4% | 60.4% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 48.0 | 4.73e-01 | 72.1% | 65.7% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.68 | 54.0 | 3.85e-01 | 100.0% | 30.1% |
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.68 | 57.0 | 4.72e-01 | 100.0% | 77.5% |
| 4ga0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 53.0 | 4.12e-01 | 100.0% | 37.8% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 51.0 | 4.94e-01 | 82.0% | 73.9% |
| 4ofzA01 | 1.20.58.1800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 57.0 | 4.74e-01 | 98.4% | 73.5% |
| 3nfqB02 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.66 | 54.0 | 4.60e-01 | 95.1% | 57.4% |
| 4nqwB00 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.66 | 47.0 | 4.47e-01 | 78.7% | 63.0% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.66 | 55.0 | 5.24e-01 | 95.1% | 83.6% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.66 | 54.0 | 5.43e-01 | 91.8% | 100.0% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.66 | 51.0 | 5.00e-01 | 91.8% | 78.6% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 54.0 | 5.48e-01 | 98.4% | 96.7% |
| 2h21A02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.65 | 51.0 | 3.81e-01 | 88.5% | 89.7% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.63 | 43.0 | 3.87e-01 | 73.8% | 63.8% |
| 1z9eA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.63 | 50.0 | 4.68e-01 | 95.1% | 74.7% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 47.0 | 3.88e-01 | 83.6% | 65.5% |
| 3gziA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 49.0 | 3.44e-01 | 88.5% | 57.1% |
| 4a1nA02 | 6.10.250.1250 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 41.0 | 4.44e-01 | 82.0% | 86.0% |
| 3llkA01 | 1.20.120.1960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain | 0.61 | 50.0 | 4.32e-01 | 93.4% | 61.2% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.60 | 48.0 | 4.75e-01 | 85.2% | 87.5% |
| 3sp1A02 | 1.20.120.1910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain | 0.60 | 48.0 | 3.64e-01 | 88.5% | 35.8% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.60 | 49.0 | 4.22e-01 | 96.7% | 85.2% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 52.0 | 3.42e-01 | 100.0% | 82.9% |
| 3m6jA01 | 1.20.1260.40 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.59 | 49.0 | 4.14e-01 | 100.0% | 99.1% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 45.0 | 3.82e-01 | 96.7% | 53.8% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 43.0 | 3.64e-01 | 82.0% | 62.8% |
| 6cgvM01 | 1.20.120.1500 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa | 0.55 | 48.0 | 3.74e-01 | 100.0% | 51.5% |
| 1f5oA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 41.0 | 3.23e-01 | 86.9% | 47.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.79 | 72.0 | 4.24e-01 | 100.0% | 44.8% | |
| 5060201 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.79 | 70.0 | 5.55e-01 | 100.0% | 65.6% |
| 3218650 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.78 | 66.0 | 5.49e-01 | 93.4% | 90.5% |
| 3259758 | 109.4.1.454 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_GBD | 0.77 | 68.0 | 4.30e-01 | 100.0% | 24.2% |
| 3387205 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.76 | 53.0 | 4.67e-01 | 73.8% | 50.0% |
| 3822956 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.75 | 66.0 | 6.48e-01 | 100.0% | 96.9% |
| 3999456 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.74 | 61.0 | 4.82e-01 | 91.8% | 77.7% |
| 3679810 | 109.4.1.590 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1 | 0.73 | 60.0 | 5.27e-01 | 93.4% | 74.7% |
| 4509261 | 109.4.1.464 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-T | 0.73 | 63.0 | 4.14e-01 | 98.4% | 59.5% |
| 3215465 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 49.0 | 3.81e-01 | 70.5% | 36.9% |
| 4961796 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.73 | 54.0 | 4.70e-01 | 78.7% | 75.6% |
| 4998688 | 192.2.1.89 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF7121 | 0.72 | 51.0 | 3.36e-01 | 73.8% | 20.8% |
| 3239152 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.72 | 60.0 | 5.39e-01 | 93.4% | 70.6% |
| 3403117 | 109.4.1.2146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27652, PF30701 | 0.72 | 62.0 | 3.69e-01 | 100.0% | 15.9% |
| 3794221 | 109.4.1.587 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C | 0.71 | 62.0 | 4.18e-01 | 100.0% | 31.7% |
| 3399321 | 109.4.1.1328 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26034 | 0.71 | 60.0 | 5.11e-01 | 98.4% | 61.0% |
| 4565296 | 109.4.1.934 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR | 0.70 | 61.0 | 4.08e-01 | 100.0% | 25.3% |
| 4162588 | 109.4.1.1276 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR | 0.70 | 60.0 | 4.24e-01 | 100.0% | 51.7% |
| 4038742 | 150.5.1.53 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE | 0.69 | 47.0 | 4.05e-01 | 70.5% | 56.8% |
| 3812606 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.68 | 56.0 | 3.89e-01 | 95.1% | 27.7% |
| 3593791 | 3069.1.1.0 ↗ | alpha arrays › BART › BART › BART | 0.68 | 57.0 | 4.42e-01 | 98.4% | 78.6% |
| 3297319 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.68 | 57.0 | 5.08e-01 | 100.0% | 67.4% |
| 4457620 | 192.27.1.0 ↗ | alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase | 0.67 | 49.0 | 5.12e-01 | 78.7% | 96.4% |
| 3169118 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.66 | 55.0 | 4.99e-01 | 98.4% | 73.3% |
| 4126882 | 611.3.1.2 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › LEDGF | 0.66 | 55.0 | 4.91e-01 | 100.0% | 76.8% |
| 3430711 | 5014.1.1.0 ↗ | extended segments › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor | 0.63 | 44.0 | 4.24e-01 | 72.1% | 75.7% |
| 4033427 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.62 | 46.0 | 4.44e-01 | 80.3% | 80.0% |
| 4991388 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.62 | 51.0 | 3.67e-01 | 91.8% | 62.8% |
| 3609997 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.61 | 50.0 | 3.38e-01 | 91.8% | 37.3% |
| 3730095 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.60 | 53.0 | 4.52e-01 | 96.7% | 73.7% |
| 4993604 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.59 | 48.0 | 3.64e-01 | 96.7% | 94.1% |
| 3545456 | 109.4.1.913 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD | 0.59 | 49.0 | 3.30e-01 | 98.4% | 30.0% |
| 5072863 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.58 | 48.0 | 3.41e-01 | 91.8% | 92.4% |
| 3787103 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.56 | 46.0 | 3.65e-01 | 96.7% | 80.0% |
| 3199608 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 45.0 | 3.88e-01 | 96.7% | 97.3% |
| 3600731 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.55 | 45.0 | 3.84e-01 | 100.0% | 81.7% |
| 4499046 | 622.4.1.56 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF3713 | 0.54 | 45.0 | 3.66e-01 | 90.2% | 79.1% |
| 3244407 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.54 | 46.0 | 4.65e-01 | 98.4% | 96.7% |
| 4025194 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 39.0 | 4.06e-01 | 83.6% | 90.9% |