Back to structures

IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003112

Arc-Vir

IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003112

Quality

93.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.65e-01 100.0% 91.3%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.66 49.0 4.87e-01 100.0% 75.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.10e-01 100.0% 76.2%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.17e-01 91.3% 93.2%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 56.0 4.80e-01 97.1% 85.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.54e-01 97.1% 94.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 52.0 5.19e-01 95.7% 90.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 44.0 4.73e-01 84.1% 88.1%
1t6eX02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.62 43.0 3.19e-01 72.5% 71.8%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.61 49.0 3.92e-01 95.7% 42.6%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.14e-01 75.4% 92.4%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 52.0 4.55e-01 100.0% 66.1%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 48.0 3.94e-01 89.9% 73.1%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.59 51.0 4.99e-01 95.7% 90.8%
1eujA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.21e-01 75.4% 51.8%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.59 45.0 3.75e-01 84.1% 82.3%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.59 44.0 3.40e-01 84.1% 100.0%
4c08A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.58 43.0 3.26e-01 81.2% 98.4%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.95e-01 89.9% 67.2%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 36.0 3.60e-01 72.5% 61.6%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 47.0 4.51e-01 89.9% 91.1%
6ipaA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.09e-01 75.4% 51.5%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.83e-01 91.3% 75.8%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 38.0 4.26e-01 76.8% 94.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 39.0 4.10e-01 78.3% 79.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.40e-01 85.5% 90.3%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 45.0 3.31e-01 89.9% 89.9%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.56 43.0 3.91e-01 89.9% 78.8%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 43.0 4.05e-01 87.0% 97.7%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 46.0 3.78e-01 95.7% 49.6%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 49.0 3.41e-01 100.0% 40.8%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 38.0 4.13e-01 76.8% 89.3%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 49.0 4.47e-01 98.6% 74.4%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.83e-01 95.7% 23.7%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.55 39.0 3.72e-01 75.4% 91.5%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.79e-01 73.9% 87.8%
4zohB03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.54 43.0 3.89e-01 91.3% 89.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.76e-01 98.6% 75.6%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.21e-01 98.6% 79.3%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 45.0 3.72e-01 97.1% 83.5%
2w3sA05 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.53 42.0 3.74e-01 88.4% 86.5%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 4.13e-01 71.0% 100.0%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.53 42.0 3.24e-01 91.3% 52.9%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 4.02e-01 89.9% 96.5%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.98e-01 89.9% 80.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 38.0 4.01e-01 81.2% 91.5%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 39.0 2.63e-01 87.0% 27.8%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.77e-01 100.0% 65.0%
2fivA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 35.0 3.06e-01 72.5% 79.6%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.62e-01 91.3% 73.5%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.50 41.0 3.25e-01 97.1% 79.4%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 41.0 3.75e-01 100.0% 92.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073200 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 61.0 6.29e-01 100.0% 96.9%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 54.0 5.47e-01 97.1% 84.3%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.69 55.0 5.76e-01 94.2% 95.2%
3734834 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 54.0 3.42e-01 88.4% 34.1%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.66 52.0 5.11e-01 98.6% 78.7%
5049556 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 48.0 3.98e-01 76.8% 75.0%
3198697 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 58.0 3.78e-01 98.6% 31.2%
4159881 220.1.1.197 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.66 54.0 4.88e-01 91.3% 85.3%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 3.61e-01 95.7% 51.4%
3198325 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 56.0 3.66e-01 97.1% 25.7%
3783617 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 57.0 5.40e-01 95.7% 98.8%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 49.0 4.72e-01 94.2% 71.2%
4549410 506.2.1.0 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain 0.64 49.0 2.72e-01 94.2% 6.4%
4068131 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 49.0 4.39e-01 94.2% 60.0%
4948716 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 44.0 4.23e-01 72.5% 100.0%
4077893 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 48.0 2.87e-01 94.2% 10.8%
3613601 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 55.0 3.58e-01 95.7% 30.9%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 48.0 4.72e-01 94.2% 76.0%
3591209 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 38.0 4.08e-01 76.8% 70.0%
4547406 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 51.0 4.86e-01 98.6% 76.2%
3388362 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 49.0 2.81e-01 95.7% 8.6%
4938400 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.62 49.0 4.25e-01 89.9% 83.5%
4339993 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.62 50.0 4.58e-01 98.6% 67.8%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 39.0 4.21e-01 76.8% 77.6%
3204055 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.62 39.0 4.01e-01 75.4% 67.7%
3239313 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 49.0 3.18e-01 87.0% 40.9%
3272487 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.61 43.0 3.32e-01 75.4% 55.6%
5011086 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.61 38.0 3.53e-01 75.4% 47.8%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 45.0 4.84e-01 82.6% 95.0%
4068291 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 40.0 4.26e-01 71.0% 85.0%
None 0.59 42.0 2.40e-01 75.4% 13.1%
3417349 59.1.3.0 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.59 47.0 4.10e-01 92.8% 85.2%
3700971 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 49.0 3.60e-01 98.6% 94.8%
3940934 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.58 40.0 3.64e-01 75.4% 52.6%
1177147 220.1.1.41 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH 0.58 46.0 3.98e-01 91.3% 65.8%
2475141 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.57 41.0 3.09e-01 75.4% 51.5%
4629131 9.29.1.1 beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.57 46.0 4.00e-01 98.6% 92.7%
None 0.56 44.0 3.03e-01 91.3% 44.5%
3795197 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 47.0 3.10e-01 94.2% 33.1%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.56 39.0 2.85e-01 72.5% 74.5%
3393645 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 43.0 3.14e-01 87.0% 70.2%
4228716 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 39.0 3.16e-01 72.5% 74.1%
3742627 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.56 48.0 4.22e-01 97.1% 76.9%
3836701 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 44.0 3.57e-01 91.3% 59.5%
3575911 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.56 46.0 3.07e-01 94.2% 32.6%
5024507 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 45.0 2.85e-01 91.3% 53.8%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.55 39.0 3.08e-01 78.3% 89.1%
5081502 4252.1.1.1 beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.54 43.0 3.52e-01 91.3% 83.6%
3993275 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.54 33.0 2.12e-01 72.5% 11.9%
3812068 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.53 43.0 3.24e-01 88.4% 93.5%
3938204 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.53 42.0 2.78e-01 91.3% 30.6%
5004850 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.53 36.0 4.00e-01 73.9% 98.0%
3919588 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.53 45.0 3.70e-01 100.0% 83.0%
5074448 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.53 42.0 2.65e-01 89.9% 78.8%
3744711 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.53 40.0 3.05e-01 84.1% 33.5%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.74e-01 76.8% 83.3%
4783841 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.51 36.0 2.39e-01 73.9% 49.4%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.41e-01 76.8% 90.9%
3628862 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.95e-01 92.8% 29.8%
4020511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.08e-01 84.1% 40.7%
3699608 77.1.1.3 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.51 37.0 3.16e-01 87.0% 43.8%
3488366 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.50 43.0 3.38e-01 98.6% 70.3%