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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003125
Arc-VirIMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003125
Identity
- Kingdom:
- archaea
Quality
93.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-64_114-138
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.51 | 34.0 | 3.55e-01 | 70.1% | 97.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3881492 | 109.4.1.411 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom | 0.58 | 43.0 | 2.93e-01 | 92.0% | 21.9% |
| 3285779 | 1185.1.1.0 ↗ | a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae | 0.52 | 46.0 | 3.92e-01 | 98.9% | 89.0% |
D2
medium
residues 72-105
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.71 | 55.0 | 4.33e-01 | 100.0% | 44.0% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.69 | 54.0 | 3.06e-01 | 100.0% | 7.7% |
| 2o0yB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 4.09e-01 | 85.3% | 52.3% |
| 1r4sA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.66 | 51.0 | 3.05e-01 | 100.0% | 11.9% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.65 | 49.0 | 3.13e-01 | 100.0% | 17.8% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.63 | 48.0 | 3.72e-01 | 97.1% | 96.8% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.61 | 47.0 | 3.76e-01 | 100.0% | 54.7% |
| 1mixA01 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.60 | 43.0 | 3.29e-01 | 100.0% | 30.6% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.59 | 48.0 | 3.19e-01 | 100.0% | 21.9% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 47.0 | 2.95e-01 | 97.1% | 67.6% |
| 5dstA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.58 | 44.0 | 2.94e-01 | 97.1% | 19.2% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.58 | 45.0 | 2.81e-01 | 100.0% | 13.7% |
| 4f3lA01 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.58 | 42.0 | 3.44e-01 | 88.2% | 40.3% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 43.0 | 3.81e-01 | 91.2% | 75.9% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 40.0 | 3.95e-01 | 97.1% | 80.5% |
| 1j5yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.59e-01 | 97.1% | 51.6% |
| 3optA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.52 | 39.0 | 2.42e-01 | 97.1% | 22.4% |
| 2jc2A01 | 6.10.140.900 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 37.0 | 3.79e-01 | 88.2% | 88.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3184003 | 101.1.1.216 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_8 | 0.90 | 74.0 | 6.33e-01 | 94.1% | 58.2% |
| 4992072 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.88 | 74.0 | 5.66e-01 | 100.0% | 42.5% |
| 4013286 | 101.1.3.9 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 | 0.80 | 62.0 | 5.45e-01 | 91.2% | 56.4% |
| 3863863 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.79 | 64.0 | 3.81e-01 | 100.0% | 12.4% |
| 3686440 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.79 | 60.0 | 4.88e-01 | 100.0% | 43.8% |
| 3575456 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.76 | 62.0 | 4.69e-01 | 100.0% | 38.9% |
| 5062338 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.76 | 62.0 | 4.68e-01 | 97.1% | 37.8% |
| 3386264 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.75 | 60.0 | 3.45e-01 | 100.0% | 9.6% |
| 5002576 | 3625.1.1.0 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain | 0.75 | 54.0 | 4.28e-01 | 100.0% | 36.3% |
| 5082655 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 53.0 | 4.85e-01 | 82.4% | 56.0% |
| 3270125 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.74 | 58.0 | 3.53e-01 | 100.0% | 13.3% |
| 3640032 | 101.1.3.9 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 | 0.73 | 58.0 | 5.09e-01 | 94.1% | 58.2% |
| 4025752 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.71 | 55.0 | 3.22e-01 | 100.0% | 10.3% |
| 3963537 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.69 | 52.0 | 3.15e-01 | 100.0% | 11.7% |
| 4640273 | 142.1.1.33 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › DUF2603 | 0.68 | 51.0 | 4.32e-01 | 100.0% | 45.3% |
| 4032053 | 2485.1.1.46 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_9 | 0.68 | 53.0 | 3.48e-01 | 100.0% | 21.7% |
| 4664968 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 52.0 | 3.19e-01 | 97.1% | 14.9% |
| 3497436 | 108.1.1.69 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › SPEF2_C | 0.65 | 50.0 | 4.01e-01 | 100.0% | 40.5% |
| 4269867 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.63 | 48.0 | 2.97e-01 | 100.0% | 16.0% |
| 3942142 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.61 | 49.0 | 3.02e-01 | 97.1% | 15.5% |
| 3604682 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.61 | 45.0 | 2.69e-01 | 100.0% | 14.1% |
| 3269487 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.59 | 45.0 | 3.61e-01 | 91.2% | 56.0% |
| 2442365 | 101.1.9.79 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_Rv1828 | 0.58 | 41.0 | 3.62e-01 | 94.1% | 50.0% |
| 4789520 | 3719.1.1.0 ↗ | alpha bundles › Imelysin peptidase-like › Imelysin peptidase-like › Imelysin peptidase-like | 0.57 | 42.0 | 3.73e-01 | 97.1% | 55.6% |
| 4993604 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.56 | 46.0 | 2.96e-01 | 94.1% | 18.8% |
| 3724512 | 148.1.1.21 ↗ | alpha arrays › Histone-like › Histone-related › Histone › SAGA-Tad1 | 0.56 | 43.0 | 3.13e-01 | 94.1% | 28.0% |
| 5059555 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.56 | 42.0 | 2.51e-01 | 97.1% | 9.1% |
| 3905523 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.54 | 42.0 | 2.94e-01 | 97.1% | 22.9% |