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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003130
Arc-VirIMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003130
Identity
- Kingdom:
- archaea
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 116-360
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ee6A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 53.0 | 5.90e-01 | 93.1% | 92.4% |
| 3eqnA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 64.0 | 5.51e-01 | 93.9% | 81.5% |
| 2inuA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 62.0 | 5.11e-01 | 93.5% | 59.6% |
| 7dmkA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 61.0 | 5.68e-01 | 93.9% | 82.3% |
| 2vjiA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 60.0 | 4.87e-01 | 93.5% | 61.4% |
| 5gkqB01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 60.0 | 5.03e-01 | 93.9% | 60.2% |
| 4c2lA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 60.0 | 5.17e-01 | 94.3% | 75.8% |
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 43.0 | 5.05e-01 | 85.3% | 91.3% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 60.0 | 4.47e-01 | 93.5% | 42.2% |
| 7b7aA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 59.0 | 5.03e-01 | 93.9% | 64.4% |
| 3vsvA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 59.0 | 4.53e-01 | 93.5% | 74.3% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 59.0 | 5.58e-01 | 93.9% | 84.2% |
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 42.0 | 5.12e-01 | 85.7% | 98.1% |
| 1pxzA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.65 | 61.0 | 5.38e-01 | 98.8% | 88.7% |
| 3jurA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.65 | 61.0 | 4.91e-01 | 99.2% | 97.5% |
| 4nk6A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 62.0 | 5.02e-01 | 100.0% | 99.8% |
| 1jtaA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 61.0 | 5.26e-01 | 100.0% | 80.6% |
| 1x0cA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 56.0 | 4.84e-01 | 93.1% | 78.3% |
| 3vmvA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.63 | 59.0 | 5.38e-01 | 100.0% | 80.9% |
| 1gq8A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.62 | 56.0 | 5.05e-01 | 93.9% | 74.5% |
| 5c1cA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.61 | 56.0 | 5.22e-01 | 97.6% | 89.0% |
| 1ogoX02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.60 | 57.0 | 4.88e-01 | 100.0% | 76.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040394 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.83 | 54.0 | 5.98e-01 | 89.0% | 80.3% |
| 5034020 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.80 | 59.0 | 5.83e-01 | 93.5% | 72.2% |
| 5071008 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.77 | 57.0 | 6.20e-01 | 93.9% | 89.3% |
| 5075881 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.76 | 60.0 | 4.24e-01 | 93.9% | 30.3% |
| 5069850 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.75 | 59.0 | 4.60e-01 | 93.9% | 41.5% |
| 5078365 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.75 | 57.0 | 6.25e-01 | 93.5% | 92.7% |
| 5032719 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.74 | 58.0 | 5.00e-01 | 93.9% | 54.9% |
| 3503258 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.73 | 39.0 | 5.38e-01 | 86.1% | 100.0% |
| 4946574 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.72 | 57.0 | 5.69e-01 | 93.9% | 78.0% |
| 3191775 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.71 | 67.0 | 4.58e-01 | 99.2% | 76.3% |
| 3560250 | 208.2.1.7 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Epiglycanin_TR | 0.70 | 38.0 | 4.96e-01 | 93.5% | 90.3% |
| 3299980 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.70 | 58.0 | 4.80e-01 | 93.5% | 51.3% |
| 3264282 | 207.2.1.73 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › PF29740 | 0.69 | 58.0 | 5.83e-01 | 93.9% | 86.9% |
| 5034336 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.69 | 57.0 | 5.52e-01 | 93.9% | 77.0% |
| 4981810 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.69 | 54.0 | 5.80e-01 | 95.9% | 91.6% |
| 4021613 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.69 | 65.0 | 5.50e-01 | 100.0% | 92.2% |
| 4355788 | 207.2.1.76 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix | 0.68 | 61.0 | 4.55e-01 | 93.9% | 51.1% |
| 4009908 | 207.2.1.66 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › WcaM | 0.68 | 61.0 | 4.89e-01 | 93.5% | 60.4% |
| 4856184 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.68 | 64.0 | 5.55e-01 | 100.0% | 96.7% |
| 3345005 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.68 | 43.0 | 5.20e-01 | 84.9% | 93.3% |
| 4055471 | 207.2.1.58 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chlam_PMP+ChlamPMP_M | 0.68 | 61.0 | 4.51e-01 | 93.9% | 40.5% |
| 5033716 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.68 | 60.0 | 4.29e-01 | 92.7% | 41.8% |
| 3193759 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.67 | 47.0 | 5.05e-01 | 89.4% | 81.4% |
| 4943117 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.66 | 54.0 | 4.46e-01 | 93.5% | 50.0% |
| 2512589 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.66 | 59.0 | 5.00e-01 | 94.3% | 70.7% |
| 3459646 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.65 | 42.0 | 4.94e-01 | 91.4% | 92.9% |
| 4003464 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.64 | 59.0 | 5.16e-01 | 95.5% | 80.3% |
| 3363461 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.64 | 52.0 | 5.67e-01 | 93.1% | 100.0% |
| 3708994 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.64 | 56.0 | 5.53e-01 | 93.1% | 88.2% |
| 3186431 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.62 | 59.0 | 4.76e-01 | 100.0% | 82.9% |
| 5059814 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.61 | 57.0 | 4.93e-01 | 100.0% | 77.3% |
| 4928776 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.61 | 54.0 | 4.88e-01 | 93.5% | 73.6% |
| 3805269 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.61 | 56.0 | 5.13e-01 | 98.8% | 86.5% |
| 1564339 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.61 | 56.0 | 5.22e-01 | 97.6% | 89.0% |
| 3952557 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.60 | 56.0 | 4.79e-01 | 100.0% | 74.0% |
| 3837801 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.59 | 53.0 | 4.83e-01 | 94.3% | 85.1% |
| 3869345 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.58 | 49.0 | 5.12e-01 | 93.1% | 97.8% |
| 3313243 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.58 | 48.0 | 4.67e-01 | 87.8% | 78.4% |
| 3454749 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.55 | 43.0 | 4.59e-01 | 90.2% | 91.6% |
| 3704197 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.54 | 44.0 | 4.66e-01 | 93.1% | 95.0% |
| 3614748 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.52 | 45.0 | 4.50e-01 | 90.2% | 89.8% |
D2
medium
residues 43-107
Domain cluster:
representative