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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003144
Arc-VirIMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003144
Identity
- Kingdom:
- archaea
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-50
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 3.70e-01 | 100.0% | 93.3% |
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.56 | 43.0 | 3.15e-01 | 91.3% | 96.0% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.41e-01 | 87.0% | 48.9% |
| 6mfxA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 42.0 | 3.07e-01 | 95.7% | 71.2% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.45e-01 | 89.1% | 56.0% |
| 3sfvB01 | 3.30.450.390 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 36.0 | 2.59e-01 | 95.7% | 23.2% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 44.0 | 3.10e-01 | 100.0% | 42.5% |
| 4g6tB00 | 6.10.20.120 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.53 | 33.0 | 2.94e-01 | 71.7% | 39.4% |
| 2v1nA01 | 1.10.10.2030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain | 0.52 | 40.0 | 3.27e-01 | 89.1% | 55.4% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 38.0 | 3.13e-01 | 84.8% | 89.4% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 40.0 | 2.78e-01 | 93.5% | 76.6% |
| 7whgG02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 38.0 | 3.17e-01 | 84.8% | 79.3% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.51 | 38.0 | 3.30e-01 | 84.8% | 71.8% |
| 3r31A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 40.0 | 2.60e-01 | 93.5% | 41.5% |
| 2yv3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 39.0 | 2.95e-01 | 95.7% | 63.3% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.50 | 38.0 | 3.24e-01 | 91.3% | 94.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5066664 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 57.0 | 5.78e-01 | 100.0% | 91.1% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 54.0 | 5.49e-01 | 100.0% | 93.2% |
| 3931418 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 58.0 | 5.39e-01 | 100.0% | 85.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.67 | 53.0 | 5.39e-01 | 100.0% | 91.1% |
| 3923675 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 56.0 | 5.05e-01 | 100.0% | 83.1% |
| 5001806 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.64 | 49.0 | 4.93e-01 | 100.0% | 83.3% |
| 4057802 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.63 | 48.0 | 4.89e-01 | 100.0% | 88.9% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 47.0 | 4.81e-01 | 100.0% | 88.9% |
| 3988478 | 857.1.1.1 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA | 0.62 | 35.0 | 2.75e-01 | 95.7% | 25.5% |
| 5023856 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 51.0 | 4.27e-01 | 97.8% | 81.2% |
| 5061797 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.60 | 43.0 | 4.51e-01 | 91.3% | 90.0% |
| 3401010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 47.0 | 3.57e-01 | 89.1% | 87.0% |
| 4981571 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 3.37e-01 | 87.0% | 37.4% |
| 3325708 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.57 | 42.0 | 2.62e-01 | 82.6% | 18.1% |
| 5038458 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.57 | 46.0 | 4.55e-01 | 97.8% | 90.0% |
| 5023640 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.57 | 41.0 | 3.51e-01 | 87.0% | 45.6% |
| 5077058 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.55 | 46.0 | 3.46e-01 | 100.0% | 88.8% |
| 2106287 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.53 | 43.0 | 3.49e-01 | 95.7% | 53.6% |
| 4029389 | 5040.1.1.0 ↗ | extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region | 0.53 | 30.0 | 2.54e-01 | 78.3% | 31.2% |
| 3629354 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.53 | 40.0 | 3.11e-01 | 91.3% | 60.8% |
| 4874839 | 880.1.1.4 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › PF30495 | 0.53 | 43.0 | 2.65e-01 | 95.7% | 68.6% |
| 5043788 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.52 | 36.0 | 2.92e-01 | 76.1% | 53.3% |
| 3656580 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.52 | 41.0 | 2.86e-01 | 89.1% | 46.9% |
| 2453059 | 6051.5.1.1 ↗ | alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N | 0.52 | 39.0 | 3.56e-01 | 84.8% | 66.7% |
| 4952416 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.52 | 43.0 | 3.27e-01 | 100.0% | 92.8% |
| 4457759 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.52 | 41.0 | 3.44e-01 | 95.7% | 90.0% |
| 3335423 | 109.4.1.1993 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif, TPR_24 | 0.52 | 40.0 | 2.25e-01 | 89.1% | 8.7% |
| 3310260 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.52 | 40.0 | 2.32e-01 | 93.5% | 10.1% |
| 5078481 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.51 | 36.0 | 2.37e-01 | 76.1% | 41.2% |
| 3587620 | 304.55.1.22 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL | 0.51 | 41.0 | 2.78e-01 | 95.7% | 93.8% |
| 4200531 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.51 | 37.0 | 2.39e-01 | 84.8% | 42.2% |
| 3330406 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 42.0 | 3.94e-01 | 95.7% | 90.0% |
| 4145444 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.50 | 38.0 | 2.25e-01 | 95.7% | 56.0% |
| 4932873 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.50 | 39.0 | 2.70e-01 | 93.5% | 46.8% |