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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003145
Arc-VirIMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003145
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-109
Domain cluster:
rep: LC754405.1__BDX35550.1__MN1_830__00083__D8-103
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.66 | 47.0 | 3.68e-01 | 73.1% | 76.2% |
| 2c5zA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.66 | 44.0 | 4.63e-01 | 76.9% | 76.3% |
| 1xwjA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 48.0 | 4.45e-01 | 77.9% | 60.8% |
| 2h8oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.65 | 50.0 | 3.66e-01 | 81.7% | 76.7% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 34.0 | 3.55e-01 | 85.6% | 53.8% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.64 | 39.0 | 4.58e-01 | 95.2% | 85.3% |
| 2z1qB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.62 | 45.0 | 4.16e-01 | 76.9% | 59.6% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 46.0 | 4.05e-01 | 78.8% | 57.1% |
| 5af7B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.62 | 43.0 | 3.86e-01 | 73.1% | 57.4% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.61 | 41.0 | 4.04e-01 | 76.0% | 65.1% |
| 1h6gA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 45.0 | 4.23e-01 | 77.9% | 71.8% |
| 2l81A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.60 | 42.0 | 3.57e-01 | 74.0% | 51.1% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.59 | 46.0 | 4.95e-01 | 99.0% | 98.8% |
| 2uuiA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.58 | 46.0 | 4.01e-01 | 83.7% | 71.0% |
| 5b00A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 52.0 | 3.85e-01 | 100.0% | 39.1% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.57 | 34.0 | 3.65e-01 | 76.9% | 69.0% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 43.0 | 4.14e-01 | 80.8% | 68.9% |
| 1rfzA00 | 1.10.3760.10 | Mainly Alpha › Orthogonal Bundle › YutG-like › PgpA-like | 0.57 | 47.0 | 4.08e-01 | 91.3% | 94.5% |
| 3tzyA01 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.56 | 50.0 | 3.41e-01 | 100.0% | 32.0% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.55 | 42.0 | 3.84e-01 | 78.8% | 62.9% |
| 7eq1R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 42.0 | 3.06e-01 | 81.7% | 30.0% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 39.0 | 3.39e-01 | 74.0% | 77.4% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 43.0 | 3.91e-01 | 84.6% | 86.4% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 49.0 | 3.51e-01 | 100.0% | 36.7% |
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 47.0 | 3.67e-01 | 98.1% | 78.2% |
| 2k3nA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.54 | 40.0 | 3.52e-01 | 77.9% | 74.4% |
| 3m03B00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 39.0 | 4.09e-01 | 91.3% | 84.2% |
| 2uvaJ10 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.54 | 45.0 | 3.94e-01 | 95.2% | 84.1% |
| 1pxyB03 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.54 | 39.0 | 3.80e-01 | 76.9% | 94.9% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 37.0 | 2.77e-01 | 74.0% | 88.5% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 38.0 | 3.94e-01 | 98.1% | 79.2% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.53 | 38.0 | 3.54e-01 | 76.9% | 65.0% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 40.0 | 3.64e-01 | 83.7% | 59.3% |
| 1kf6D00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.52 | 38.0 | 3.65e-01 | 75.0% | 84.9% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 3.81e-01 | 86.5% | 90.8% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.52 | 46.0 | 4.24e-01 | 100.0% | 100.0% |
| 3we9A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 39.0 | 3.00e-01 | 80.8% | 63.2% |
| 3fnrA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.51 | 44.0 | 4.04e-01 | 99.0% | 75.9% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.51 | 41.0 | 3.90e-01 | 88.5% | 78.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3402139 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.65 | 37.0 | 4.07e-01 | 80.8% | 68.2% |
| 3610921 | 604.5.1.36 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › UPF0220 | 0.63 | 47.0 | 4.38e-01 | 77.9% | 63.1% |
| 4111212 | 622.4.1.30 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › ETR1_N | 0.62 | 46.0 | 4.68e-01 | 82.7% | 79.0% |
| 3429223 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.62 | 44.0 | 3.85e-01 | 76.9% | 50.7% |
| 3617986 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.61 | 48.0 | 4.00e-01 | 83.7% | 81.7% |
| 3578418 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 43.0 | 3.95e-01 | 81.7% | 56.3% |
| 4192664 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.60 | 44.0 | 3.14e-01 | 81.7% | 25.8% |
| 3208120 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.59 | 44.0 | 3.83e-01 | 76.9% | 61.9% |
| 4007651 | 6055.1.1.24 ↗ | extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › DUF1422 | 0.58 | 41.0 | 4.70e-01 | 76.0% | 96.2% |
| 3642678 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.57 | 43.0 | 3.64e-01 | 77.9% | 47.6% |
| 3523264 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.57 | 40.0 | 3.79e-01 | 76.9% | 59.2% |
| 2038540 | 3817.1.1.1 ↗ | alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 | 0.54 | 42.0 | 3.80e-01 | 81.7% | 67.6% |
| 3710754 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.53 | 38.0 | 3.45e-01 | 96.2% | 53.8% |
| 3857096 | 109.4.1.97 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2,TPR_12 | 0.53 | 39.0 | 2.91e-01 | 100.0% | 31.6% |
| 4982694 | 3843.1.1.35 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF1634 | 0.53 | 43.0 | 4.44e-01 | 89.4% | 91.8% |
| 3284 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.52 | 41.0 | 3.81e-01 | 86.5% | 90.8% |
| 3605579 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 41.0 | 2.96e-01 | 100.0% | 31.3% |
| 3336125 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.52 | 44.0 | 3.67e-01 | 93.3% | 54.7% |
| 3731035 | 3924.1.1.0 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 | 0.52 | 40.0 | 3.35e-01 | 82.7% | 93.5% |
| 3337178 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.51 | 38.0 | 3.19e-01 | 96.2% | 47.1% |
| 3563871 | 603.1.1.121 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 | 0.51 | 35.0 | 3.46e-01 | 76.0% | 63.5% |
| 3449656 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 34.0 | 2.39e-01 | 96.2% | 20.3% |
| 3393646 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.51 | 43.0 | 4.17e-01 | 94.2% | 83.3% |
| 3363699 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.51 | 34.0 | 3.86e-01 | 79.8% | 96.0% |
| 3678505 | 3567.1.1.88 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PGG | 0.50 | 45.0 | 3.96e-01 | 100.0% | 76.1% |