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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003160

Arc-Vir

IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003160

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-56
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.73 61.0 4.34e-01 100.0% 31.0%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.72 52.0 5.45e-01 91.1% 84.3%
1yq3C02 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.70 59.0 4.83e-01 100.0% 50.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.70 55.0 4.50e-01 85.7% 49.0%
3k8pC02 1.10.357.150 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.70 55.0 3.79e-01 85.7% 54.2%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.70 55.0 4.59e-01 94.6% 50.0%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 60.0 5.64e-01 98.2% 83.8%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 61.0 4.99e-01 100.0% 68.6%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.68 40.0 3.75e-01 80.4% 47.1%
4l6v600 1.10.8.110 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF 0.67 55.0 4.30e-01 96.4% 41.6%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 4.26e-01 85.7% 47.1%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.65 57.0 4.20e-01 100.0% 43.8%
3fd0A01 3.90.1150.60 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain 0.65 57.0 3.96e-01 100.0% 44.6%
2xmoA02 1.10.246.180 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 55.0 4.79e-01 94.6% 62.8%
4z7fB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.65 54.0 3.99e-01 100.0% 33.9%
4bejB02 1.20.120.1240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain 0.65 57.0 3.80e-01 100.0% 48.9%
5k2xA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 57.0 3.40e-01 100.0% 87.7%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.65 56.0 5.30e-01 100.0% 85.3%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 51.0 4.47e-01 96.4% 58.0%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.64 53.0 3.80e-01 91.1% 37.3%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 51.0 5.22e-01 87.5% 94.4%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.63 56.0 4.44e-01 100.0% 59.0%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 50.0 3.88e-01 85.7% 53.7%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.62 49.0 4.25e-01 89.3% 59.6%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 55.0 4.02e-01 100.0% 66.4%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.61 49.0 3.55e-01 87.5% 51.3%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.61 43.0 3.81e-01 85.7% 50.0%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 55.0 4.79e-01 100.0% 86.6%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 3.87e-01 92.9% 43.9%
2xtzA02 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.60 53.0 4.08e-01 100.0% 77.8%
2oqmB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.59 49.0 3.58e-01 96.4% 95.9%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 46.0 3.66e-01 83.9% 41.6%
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.59 40.0 3.92e-01 71.4% 82.0%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.58 46.0 3.79e-01 91.1% 47.6%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.58 49.0 4.68e-01 98.2% 97.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.58 47.0 4.60e-01 92.9% 80.3%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.58 51.0 4.53e-01 100.0% 82.9%
1j7nA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.58 47.0 3.17e-01 92.9% 42.3%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 44.0 3.50e-01 83.9% 42.6%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.57 47.0 3.94e-01 92.9% 53.7%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.57 44.0 3.56e-01 85.7% 46.4%
6grjB01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.56 49.0 3.08e-01 100.0% 68.9%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.56 40.0 3.48e-01 85.7% 46.7%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 47.0 4.48e-01 96.4% 94.1%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.53 45.0 4.24e-01 98.2% 91.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 4.32e-01 100.0% 90.4%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484130 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.84 74.0 4.59e-01 100.0% 35.5%
4022861 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.82 74.0 4.62e-01 100.0% 33.6%
3209602 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.81 74.0 6.68e-01 100.0% 80.0%
3446166 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.80 72.0 4.45e-01 100.0% 35.3%
3398929 5041.1.1.32 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 0.80 74.0 6.22e-01 100.0% 63.3%
3436965 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.79 74.0 6.04e-01 100.0% 62.1%
3585359 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 71.0 4.38e-01 100.0% 32.3%
3786455 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 71.0 4.36e-01 100.0% 19.0%
3692515 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.77 69.0 4.26e-01 100.0% 31.1%
3969668 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.77 68.0 4.47e-01 100.0% 37.8%
3482541 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.77 67.0 4.23e-01 100.0% 20.0%
3261624 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.74 55.0 5.81e-01 100.0% 90.0%
3455488 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.74 64.0 6.27e-01 100.0% 88.3%
3667494 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.73 58.0 3.72e-01 100.0% 18.2%
None 0.73 58.0 3.73e-01 100.0% 18.5%
3194794 5051.1.1.3 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF 0.72 60.0 3.41e-01 92.9% 27.3%
3428080 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.72 64.0 4.07e-01 100.0% 20.4%
3363699 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.72 58.0 5.38e-01 92.9% 70.7%
3314055 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.71 61.0 5.61e-01 100.0% 91.9%
5003923 5042.1.1.1 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.71 61.0 5.76e-01 100.0% 88.6%
4571267 1079.1.1.13 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp 0.70 58.0 4.07e-01 92.9% 65.2%
3271908 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.70 62.0 3.97e-01 100.0% 33.1%
3229717 3470.1.1.29 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV 0.70 59.0 5.52e-01 100.0% 77.1%
3598977 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 61.0 5.34e-01 100.0% 67.1%
3787527 142.3.1.1 alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.69 58.0 5.20e-01 100.0% 65.9%
3724047 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.69 62.0 3.81e-01 100.0% 22.9%
5022551 3788.1.1.0 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.69 59.0 4.66e-01 100.0% 46.7%
3926271 174.1.1.56 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › TMD0_ABC 0.68 57.0 3.88e-01 91.1% 66.7%
3453796 7519.1.1.11 a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › Rick_17kDa_Anti, PF29034 0.67 57.0 4.72e-01 98.2% 66.7%
3282529 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.67 46.0 3.82e-01 80.4% 39.0%
3733951 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.67 55.0 5.22e-01 96.4% 81.4%
3744787 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.66 45.0 3.45e-01 71.4% 33.8%
4014102 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.66 54.0 5.46e-01 100.0% 98.2%
3601022 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.64 52.0 3.41e-01 100.0% 94.7%
3714810 5086.1.1.102 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp 0.64 55.0 3.88e-01 100.0% 47.6%
3474688 3965.1.1.0 alpha arrays › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain 0.64 53.0 3.64e-01 92.9% 27.5%
3786517 5059.1.1.40 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F, DUF3955 0.64 52.0 3.19e-01 92.9% 14.7%
5068089 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.63 54.0 4.37e-01 100.0% 60.9%
4946656 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 49.0 3.81e-01 83.9% 41.7%
4520394 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.63 53.0 5.02e-01 100.0% 85.5%
3626343 3396.1.1.2 extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF1757 0.63 51.0 3.51e-01 94.6% 24.9%
3362557 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.63 55.0 3.67e-01 96.4% 78.1%
3598146 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.62 52.0 4.24e-01 92.9% 51.0%
3603032 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.62 51.0 4.44e-01 92.9% 60.0%
3582858 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.62 56.0 3.96e-01 100.0% 64.8%
4554168 1079.1.1.13 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp 0.62 51.0 3.70e-01 98.2% 72.0%
3542652 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.62 54.0 3.86e-01 100.0% 82.4%
3648942 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.62 51.0 3.69e-01 91.1% 33.5%
3486748 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 54.0 4.37e-01 98.2% 58.1%
4969424 632.18.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.61 52.0 4.77e-01 96.4% 76.0%
3283790 150.7.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.60 52.0 4.15e-01 98.2% 60.9%
3456226 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.59 50.0 3.32e-01 98.2% 42.7%
3433147 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 49.0 4.13e-01 98.2% 54.0%
3944006 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 51.0 3.92e-01 98.2% 45.6%
3989928 148.1.3.197 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Transgly_assoc 0.58 44.0 4.02e-01 82.1% 74.7%
4010416 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 51.0 3.94e-01 98.2% 45.6%
4602761 105.2.1.91 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › SPICE 0.57 47.0 3.55e-01 94.6% 38.5%
1668933 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.57 49.0 4.08e-01 98.2% 55.1%
4996909 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.55 49.0 3.58e-01 100.0% 51.3%