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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_1000000317
Arc-VirIMGVR_UViG_3300002120_000001-3300002120-C687J26616_1000000317
Identity
- Kingdom:
- archaea
Quality
90.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-48
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uyvB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.88 | 68.0 | 4.04e-01 | 84.8% | 13.1% |
| 1w9cA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.80 | 64.0 | 3.81e-01 | 89.1% | 12.8% |
| 3v7dD01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.78 | 65.0 | 5.12e-01 | 97.8% | 44.0% |
| 2ekfA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.78 | 51.0 | 5.14e-01 | 71.7% | 67.4% |
| 1otrA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 52.0 | 5.16e-01 | 76.1% | 67.3% |
| 2ejsA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 51.0 | 4.76e-01 | 73.9% | 55.2% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.76 | 55.0 | 4.81e-01 | 87.0% | 50.7% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.76 | 52.0 | 4.60e-01 | 71.7% | 49.3% |
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.76 | 65.0 | 5.07e-01 | 100.0% | 49.0% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.76 | 57.0 | 4.85e-01 | 82.6% | 54.5% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.76 | 60.0 | 4.91e-01 | 91.3% | 47.8% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.75 | 56.0 | 4.04e-01 | 82.6% | 28.5% |
| 3e21A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 49.0 | 5.13e-01 | 71.7% | 77.5% |
| 1kl7A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.71 | 56.0 | 3.51e-01 | 89.1% | 51.0% |
| 1n5uA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.71 | 58.0 | 4.53e-01 | 95.7% | 41.7% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.70 | 59.0 | 4.95e-01 | 97.8% | 55.1% |
| 4csrA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.69 | 58.0 | 4.78e-01 | 95.7% | 53.4% |
| 2ga8A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 53.0 | 3.22e-01 | 89.1% | 13.1% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 45.0 | 4.43e-01 | 73.9% | 64.0% |
| 2e1qC10 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.67 | 49.0 | 3.59e-01 | 100.0% | 28.9% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 51.0 | 4.31e-01 | 95.7% | 47.7% |
| 6ofuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 58.0 | 3.57e-01 | 97.8% | 88.8% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 54.0 | 4.14e-01 | 89.1% | 43.9% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.64 | 51.0 | 4.11e-01 | 97.8% | 44.3% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 50.0 | 3.15e-01 | 100.0% | 78.5% |
| 4ihqA02 | 1.10.390.40 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.55 | 38.0 | 3.53e-01 | 76.1% | 56.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3856670 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.88 | 67.0 | 6.52e-01 | 80.4% | 76.0% |
| 3302016 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.86 | 60.0 | 5.89e-01 | 73.9% | 68.0% |
| 4478441 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.86 | 59.0 | 5.72e-01 | 76.1% | 66.0% |
| 3483536 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.86 | 75.0 | 5.39e-01 | 95.7% | 36.7% |
| 5082960 | 159.1.2.35 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › HAAS | 0.85 | 65.0 | 5.45e-01 | 82.6% | 52.0% |
| 3677130 | 103.1.1.34 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical | 0.85 | 62.0 | 4.33e-01 | 80.4% | 26.7% |
| 4913800 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.84 | 75.0 | 6.23e-01 | 100.0% | 58.2% |
| 3726046 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.84 | 59.0 | 5.73e-01 | 76.1% | 68.0% |
| 3411687 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.82 | 56.0 | 5.72e-01 | 71.7% | 73.3% |
| 4067657 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.82 | 56.0 | 5.70e-01 | 71.7% | 73.3% |
| 3503648 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.82 | 62.0 | 5.69e-01 | 82.6% | 65.0% |
| 3602245 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.82 | 60.0 | 5.30e-01 | 78.3% | 56.9% |
| 5048048 | 4957.1.1.9 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS | 0.81 | 62.0 | 5.21e-01 | 82.6% | 52.0% |
| 3426642 | 375.1.1.96 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY | 0.80 | 60.0 | 5.90e-01 | 82.6% | 76.0% |
| 5022532 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 69.0 | 5.90e-01 | 97.8% | 60.0% |
| 3741476 | 101.1.2.527 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 | 0.79 | 64.0 | 4.96e-01 | 89.1% | 42.0% |
| 3742957 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.79 | 64.0 | 5.90e-01 | 91.3% | 70.0% |
| 3970206 | 857.1.1.0 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like | 0.78 | 63.0 | 5.64e-01 | 89.1% | 64.6% |
| 3581450 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.78 | 56.0 | 5.28e-01 | 76.1% | 63.6% |
| 3492824 | 103.15.1.1 ↗ | alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23 | 0.78 | 63.0 | 4.60e-01 | 89.1% | 40.0% |
| 3404381 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.77 | 57.0 | 5.77e-01 | 82.6% | 82.2% |
| 4061431 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.77 | 60.0 | 5.88e-01 | 89.1% | 80.0% |
| 3602071 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 64.0 | 3.58e-01 | 100.0% | 7.7% |
| 4339297 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 66.0 | 4.30e-01 | 100.0% | 28.2% |
| 3250499 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.73 | 53.0 | 4.90e-01 | 78.3% | 60.0% |
| 5070097 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.73 | 64.0 | 4.02e-01 | 100.0% | 44.9% |
| 3211160 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 48.0 | 5.05e-01 | 71.7% | 82.5% |
| 5080036 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.70 | 60.0 | 3.92e-01 | 100.0% | 55.3% |
| 3970007 | 3502.1.1.0 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein | 0.69 | 56.0 | 4.78e-01 | 91.3% | 72.0% |
| 3416236 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.67 | 50.0 | 5.08e-01 | 89.1% | 82.2% |