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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_1000000325
Arc-VirIMGVR_UViG_3300002120_000001-3300002120-C687J26616_1000000325
Identity
- Kingdom:
- archaea
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-92_144-178
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oqhA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.70 | 47.0 | 4.21e-01 | 80.2% | 49.1% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 49.0 | 5.28e-01 | 74.1% | 100.0% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.67 | 52.0 | 5.08e-01 | 86.4% | 92.4% |
| 4hd1A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.67 | 56.0 | 3.96e-01 | 95.1% | 68.1% |
| 4g9pA01 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.66 | 43.0 | 2.99e-01 | 80.2% | 19.2% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.65 | 45.0 | 4.97e-01 | 79.0% | 90.6% |
| 4akgA14 | 1.20.1280.160 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 46.0 | 4.16e-01 | 74.1% | 100.0% |
| 1sgmA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 49.0 | 3.72e-01 | 81.5% | 51.6% |
| 4akgA04 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.63 | 52.0 | 4.28e-01 | 92.6% | 66.0% |
| 4cgrB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 52.0 | 4.01e-01 | 93.8% | 63.4% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.84e-01 | 86.4% | 100.0% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.61 | 50.0 | 4.63e-01 | 92.6% | 97.2% |
| 1l9lA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 44.0 | 4.58e-01 | 75.3% | 86.5% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 49.0 | 4.57e-01 | 91.4% | 94.3% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 46.0 | 3.94e-01 | 82.7% | 97.8% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.60 | 45.0 | 3.41e-01 | 82.7% | 89.6% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 43.0 | 3.65e-01 | 79.0% | 90.0% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 48.0 | 3.96e-01 | 91.4% | 90.0% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.58 | 44.0 | 3.49e-01 | 81.5% | 51.7% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.58 | 47.0 | 4.64e-01 | 88.9% | 93.1% |
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.58 | 49.0 | 4.96e-01 | 97.5% | 93.9% |
| 4l9pA00 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.58 | 48.0 | 3.19e-01 | 91.4% | 47.2% |
| 4giwB00 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.58 | 41.0 | 3.25e-01 | 74.1% | 87.1% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 40.0 | 4.42e-01 | 75.3% | 95.2% |
| 3ujpB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 47.0 | 3.90e-01 | 91.4% | 100.0% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.57 | 41.0 | 4.51e-01 | 76.5% | 95.4% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 36.0 | 3.66e-01 | 82.7% | 63.0% |
| 1ugoA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 47.0 | 4.41e-01 | 90.1% | 85.9% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.56 | 44.0 | 4.41e-01 | 85.2% | 92.9% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 47.0 | 4.33e-01 | 90.1% | 93.1% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.56 | 40.0 | 3.93e-01 | 74.1% | 88.4% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.55 | 40.0 | 3.02e-01 | 79.0% | 31.3% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 38.0 | 3.74e-01 | 75.3% | 65.6% |
| 4pxoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 42.0 | 3.71e-01 | 86.4% | 92.4% |
| 6sy1A02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.55 | 47.0 | 3.05e-01 | 95.1% | 92.7% |
| 8fnyA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 39.0 | 2.95e-01 | 75.3% | 29.6% |
| 2jgdB02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.54 | 41.0 | 2.81e-01 | 84.0% | 45.7% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.54 | 41.0 | 4.05e-01 | 86.4% | 89.9% |
| 3vwaA03 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 44.0 | 3.04e-01 | 91.4% | 46.6% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 39.0 | 3.57e-01 | 80.2% | 74.4% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.53e-01 | 75.3% | 100.0% |
| 1lb3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 45.0 | 3.64e-01 | 97.5% | 56.9% |
| 1e6bA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 39.0 | 3.54e-01 | 79.0% | 89.2% |
| 2lvfA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.53 | 38.0 | 3.50e-01 | 79.0% | 68.4% |
| 4j8sA00 | 1.25.40.840 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain | 0.52 | 41.0 | 3.26e-01 | 87.7% | 39.4% |
| 1zu2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 42.0 | 3.51e-01 | 95.1% | 72.2% |
| 1ho8A02 | 1.25.40.150 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain | 0.51 | 38.0 | 3.50e-01 | 81.5% | 61.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973918 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.70 | 55.0 | 5.07e-01 | 85.2% | 64.8% |
| 3971653 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.68 | 55.0 | 4.19e-01 | 88.9% | 91.1% |
| 3244588 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.64 | 48.0 | 4.66e-01 | 84.0% | 73.3% |
| 4356696 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.63 | 45.0 | 4.80e-01 | 82.7% | 87.1% |
| 4859375 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.63 | 49.0 | 3.40e-01 | 85.2% | 32.6% |
| 3943035 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.63 | 44.0 | 4.82e-01 | 74.1% | 92.3% |
| 3676992 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 50.0 | 3.42e-01 | 87.7% | 86.8% |
| 3912984 | 3736.1.1.1 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD2 | 0.62 | 50.0 | 4.25e-01 | 87.7% | 67.4% |
| 3956659 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.62 | 51.0 | 3.95e-01 | 90.1% | 70.6% |
| 4049391 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.62 | 48.0 | 4.63e-01 | 85.2% | 76.8% |
| 3898036 | 3736.1.1.1 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD2 | 0.62 | 51.0 | 4.61e-01 | 90.1% | 85.5% |
| 5017220 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 42.0 | 4.55e-01 | 80.2% | 89.2% |
| 3786576 | 109.58.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain | 0.62 | 53.0 | 4.76e-01 | 96.3% | 72.2% |
| 3887798 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.60 | 48.0 | 4.04e-01 | 86.4% | 51.5% |
| 3865185 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.60 | 47.0 | 4.47e-01 | 93.8% | 71.6% |
| 3264612 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.60 | 49.0 | 3.86e-01 | 91.4% | 87.2% |
| 3602776 | 605.6.1.12 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › PF27273 | 0.60 | 38.0 | 3.87e-01 | 84.0% | 65.0% |
| 3838379 | 601.53.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellin glycosyltransferase Maf helical bundle domain › Flagellin glycosyltransferase Maf helical bundle domain | 0.60 | 50.0 | 4.61e-01 | 95.1% | 70.0% |
| 3681479 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.60 | 46.0 | 4.11e-01 | 84.0% | 65.8% |
| 3700785 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 4.76e-01 | 76.5% | 96.9% |
| 3722151 | 109.4.1.222 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB | 0.59 | 51.0 | 3.92e-01 | 97.5% | 92.8% |
| 3488531 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 49.0 | 3.53e-01 | 93.8% | 32.9% |
| 4305528 | 109.4.1.222 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB | 0.58 | 49.0 | 3.65e-01 | 95.1% | 50.9% |
| 3687239 | 109.4.1.563 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3437 | 0.58 | 52.0 | 3.82e-01 | 100.0% | 59.6% |
| 4532425 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.58 | 49.0 | 3.05e-01 | 96.3% | 69.2% |
| 4657744 | 109.4.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB | 0.58 | 49.0 | 3.36e-01 | 93.8% | 38.3% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.57 | 43.0 | 4.40e-01 | 88.9% | 88.0% |
| 4169956 | 604.12.1.26 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › HemX | 0.57 | 43.0 | 4.43e-01 | 84.0% | 93.3% |
| 5039404 | 604.2.1.0 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain | 0.56 | 43.0 | 4.42e-01 | 82.7% | 98.7% |
| 167966 | 4009.1.1.4 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › DUF3243 | 0.56 | 40.0 | 3.93e-01 | 74.1% | 88.4% |
| 3580281 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 47.0 | 4.32e-01 | 92.6% | 99.0% |
| 5000432 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.56 | 45.0 | 4.34e-01 | 87.7% | 96.7% |
| 4875922 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.55 | 45.0 | 3.41e-01 | 91.4% | 76.5% |
| 3806925 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.55 | 44.0 | 2.62e-01 | 87.7% | 15.7% |
| 3526105 | 604.3.1.18 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27519 | 0.55 | 41.0 | 4.00e-01 | 80.2% | 88.9% |
| 3603261 | 109.47.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical C-terminal domain in magnesium chelatase catalytic subunit › Helical C-terminal domain in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.55 | 42.0 | 3.56e-01 | 85.2% | 48.0% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.54 | 37.0 | 4.16e-01 | 71.6% | 92.3% |
| 3649876 | 611.3.1.11 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › TOR1L1_N | 0.53 | 35.0 | 3.65e-01 | 76.5% | 73.3% |
| 5045838 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.53 | 44.0 | 4.02e-01 | 92.6% | 76.4% |
| 5052520 | 601.1.1.156 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF998 | 0.53 | 43.0 | 3.48e-01 | 93.8% | 95.5% |
| 3770218 | 101.1.4.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou | 0.52 | 37.0 | 3.49e-01 | 75.3% | 74.8% |
| 3345552 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 3.04e-01 | 80.2% | 54.9% |
| 3504034 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.50 | 35.0 | 3.59e-01 | 75.3% | 73.8% |
D2
medium
residues 93-143
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ne2B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 3.13e-01 | 100.0% | 32.2% |
| 4kc3B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.34e-01 | 86.3% | 76.8% |
| 1kj6A00 | 3.10.360.10 | Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › Antimicrobial Peptide, Beta-defensin 2; Chain A | 0.52 | 33.0 | 3.45e-01 | 96.1% | 66.7% |
| 4wkrA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 39.0 | 3.63e-01 | 92.2% | 76.4% |
| 3mb5A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 41.0 | 2.94e-01 | 100.0% | 39.4% |
| 1wkiA01 | 3.90.1170.10 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 | 0.50 | 40.0 | 3.33e-01 | 100.0% | 91.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3960399 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.57 | 45.0 | 2.94e-01 | 88.2% | 47.3% |
| 3577567 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 45.0 | 3.95e-01 | 96.1% | 71.8% |
| 3599459 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 43.0 | 3.57e-01 | 92.2% | 64.4% |
| 3682561 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 39.0 | 3.58e-01 | 88.2% | 71.2% |
| 4995700 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.53 | 42.0 | 2.81e-01 | 100.0% | 21.5% |
| 5034555 | 304.113.1.0 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain | 0.52 | 44.0 | 3.45e-01 | 100.0% | 50.0% |
| 5038641 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.52 | 40.0 | 3.39e-01 | 88.2% | 78.9% |
| 3708799 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 41.0 | 3.35e-01 | 98.0% | 51.3% |
| 3786296 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 41.0 | 3.25e-01 | 94.1% | 48.3% |
| 3724810 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.51 | 42.0 | 3.67e-01 | 100.0% | 76.5% |
| 5028466 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.51 | 41.0 | 3.24e-01 | 96.1% | 43.3% |
| 3256556 | 304.9.1.36 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_10 | 0.50 | 40.0 | 3.37e-01 | 98.0% | 62.1% |
D3
medium
residues 179-286_345-381
Domain cluster:
rep: MN698246.1__QGZ18180.1__HTVC112P_gp03__00003__D120-243
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.79 | 57.0 | 5.12e-01 | 100.0% | 54.9% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.79 | 56.0 | 4.91e-01 | 100.0% | 51.0% |
| 5zyuA01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.76 | 57.0 | 5.11e-01 | 97.9% | 56.2% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.74 | 56.0 | 4.75e-01 | 97.9% | 50.2% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.72 | 56.0 | 4.91e-01 | 100.0% | 56.0% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.71 | 57.0 | 4.95e-01 | 100.0% | 56.2% |
| 3u4qA06 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.70 | 48.0 | 4.13e-01 | 81.4% | 45.9% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 37.0 | 4.06e-01 | 87.6% | 63.9% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.64 | 35.0 | 3.87e-01 | 81.4% | 63.9% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.62 | 35.0 | 3.65e-01 | 84.1% | 58.8% |
| 4ftfA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.61 | 36.0 | 4.11e-01 | 85.5% | 78.0% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 38.0 | 4.49e-01 | 83.4% | 94.7% |
| 3npdA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.57 | 37.0 | 4.10e-01 | 86.2% | 82.3% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.57 | 30.0 | 3.13e-01 | 83.4% | 51.1% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.56 | 36.0 | 3.34e-01 | 81.4% | 51.1% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.52 | 34.0 | 3.75e-01 | 84.8% | 82.1% |
| 1r6bX05 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 25.0 | 2.94e-01 | 95.9% | 63.6% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000157 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.85 | 61.0 | 5.35e-01 | 100.0% | 53.0% |
| 3588071 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.82 | 63.0 | 6.05e-01 | 94.5% | 71.2% |
| 3969697 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.81 | 59.0 | 5.82e-01 | 95.2% | 70.3% |
| 4247735 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.81 | 66.0 | 4.02e-01 | 100.0% | 15.5% |
| 4943737 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.81 | 60.0 | 5.85e-01 | 93.1% | 70.0% |
| 4031223 | 2008.1.1.204 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2800 | 0.79 | 60.0 | 4.91e-01 | 100.0% | 45.2% |
| 3253903 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.78 | 56.0 | 4.82e-01 | 98.6% | 48.2% |
| 4332382 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.76 | 46.0 | 5.02e-01 | 84.8% | 72.3% |
| 4403112 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.76 | 47.0 | 5.05e-01 | 84.8% | 72.4% |
| 4066769 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.76 | 45.0 | 5.19e-01 | 82.1% | 79.6% |
| 3288745 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.75 | 54.0 | 4.79e-01 | 92.4% | 52.7% |
| 4407114 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.75 | 49.0 | 5.38e-01 | 84.8% | 80.0% |
| 1305832 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.75 | 51.0 | 3.97e-01 | 80.7% | 35.4% |
| 5043227 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.75 | 55.0 | 4.31e-01 | 100.0% | 37.5% |
| 4955488 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 48.0 | 5.42e-01 | 93.1% | 84.5% |
| 4239378 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.74 | 46.0 | 5.02e-01 | 88.3% | 74.0% |
| 4189444 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.74 | 45.0 | 4.96e-01 | 84.8% | 74.2% |
| 4955135 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.74 | 53.0 | 4.12e-01 | 100.0% | 34.8% |
| 4315832 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.74 | 44.0 | 4.91e-01 | 81.4% | 74.8% |
| 3221910 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.73 | 62.0 | 5.01e-01 | 100.0% | 49.6% |
| 4394279 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.73 | 46.0 | 5.06e-01 | 82.8% | 76.7% |
| 3369565 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.73 | 65.0 | 5.37e-01 | 100.0% | 56.2% |
| 424674 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.73 | 56.0 | 4.76e-01 | 98.6% | 50.7% |
| 4060516 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.73 | 47.0 | 5.18e-01 | 86.2% | 80.9% |
| 4666672 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.73 | 45.0 | 5.04e-01 | 81.4% | 78.3% |
| 4252439 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.73 | 46.0 | 5.11e-01 | 82.1% | 80.5% |
| 4670340 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.72 | 46.0 | 5.10e-01 | 84.8% | 80.7% |
| 4208554 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.72 | 46.0 | 5.07e-01 | 82.1% | 80.0% |
| 4534629 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.72 | 48.0 | 5.20e-01 | 85.5% | 80.8% |
| 4223955 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.71 | 45.0 | 4.87e-01 | 82.1% | 75.8% |
| 4536530 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.71 | 51.0 | 4.15e-01 | 82.1% | 43.3% |
| 4412405 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.70 | 44.0 | 4.92e-01 | 81.4% | 79.1% |
| 4392521 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 66.0 | 5.18e-01 | 100.0% | 50.7% |
| 4010258 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.70 | 56.0 | 4.60e-01 | 100.0% | 46.4% |
| 2439587 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 53.0 | 4.50e-01 | 97.2% | 49.4% |
| 4261280 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.70 | 43.0 | 4.66e-01 | 82.8% | 73.3% |
| 4135840 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 65.0 | 4.69e-01 | 100.0% | 50.9% |
| 4239877 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.70 | 61.0 | 4.67e-01 | 100.0% | 42.5% |
| 3976411 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.69 | 57.0 | 4.69e-01 | 100.0% | 49.6% |
| 4678216 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.69 | 65.0 | 4.56e-01 | 100.0% | 47.9% |
| None | — | 0.69 | 62.0 | 4.84e-01 | 100.0% | 47.3% | |
| 4311371 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.69 | 44.0 | 4.78e-01 | 82.8% | 76.7% |
| 1233603 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.69 | 65.0 | 4.60e-01 | 100.0% | 49.0% |
| 4519331 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.69 | 64.0 | 4.62e-01 | 100.0% | 50.6% |
| 4141864 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.69 | 44.0 | 4.84e-01 | 82.1% | 79.0% |
| 4036845 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.68 | 62.0 | 4.91e-01 | 100.0% | 49.8% |
| 4646581 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 63.0 | 4.55e-01 | 100.0% | 50.9% |
| 4324379 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.68 | 63.0 | 4.69e-01 | 100.0% | 51.0% |
| 4599083 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 63.0 | 4.55e-01 | 100.0% | 49.2% |
| 4051173 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 63.0 | 4.51e-01 | 100.0% | 52.0% |
| 4942551 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.67 | 61.0 | 5.21e-01 | 100.0% | 63.2% |
| 4252779 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 62.0 | 3.63e-01 | 100.0% | 17.3% |
| 4022097 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.66 | 61.0 | 4.85e-01 | 100.0% | 52.2% |
| 3508213 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 47.0 | 4.38e-01 | 89.7% | 59.4% |
| 4037784 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.65 | 45.0 | 4.73e-01 | 82.1% | 78.5% |
| 4084414 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.65 | 50.0 | 5.13e-01 | 84.1% | 83.6% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.62 | 58.0 | 5.13e-01 | 100.0% | 71.7% |
| 4292774 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.59 | 45.0 | 3.71e-01 | 82.8% | 46.0% |
| 3454551 | 327.5.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › GH3_C | 0.52 | 42.0 | 4.05e-01 | 83.4% | 98.8% |
| 4471786 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 39.0 | 3.38e-01 | 84.8% | 51.4% |
| 4950204 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 39.0 | 3.84e-01 | 81.4% | 81.2% |
| 4450918 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.51 | 46.0 | 3.46e-01 | 100.0% | 83.5% |
| 3972736 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 37.0 | 3.51e-01 | 80.0% | 62.3% |
D4
medium
residues 287-344
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 12asA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 49.0 | 3.05e-01 | 96.6% | 49.2% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.57 | 42.0 | 4.05e-01 | 82.8% | 74.6% |
| 1bohA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.57 | 43.0 | 3.32e-01 | 82.8% | 60.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4655169 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 62.0 | 4.30e-01 | 100.0% | 48.7% |
| 4991946 | 7536.1.1.1 ↗ | a/b three-layered sandwiches › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › DUF4147 | 0.66 | 53.0 | 3.59e-01 | 91.4% | 53.3% |
| 3343788 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.59 | 49.0 | 3.71e-01 | 100.0% | 58.7% |
| 3330430 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.55 | 43.0 | 2.90e-01 | 93.1% | 87.3% |
| 5073810 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.50 | 42.0 | 2.80e-01 | 100.0% | 28.9% |