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IMGVR_UViG_3300002120_000001-3300002120-C687J26616_1000000330

Arc-Vir

IMGVR_UViG_3300002120_000001-3300002120-C687J26616_1000000330

Identity

Kingdom:
archaea

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p1wA00 1.10.10.2570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 39.0 3.71e-01 85.5% 45.8%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.63 45.0 2.90e-01 74.2% 24.3%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 44.0 3.02e-01 72.6% 44.0%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 44.0 3.34e-01 100.0% 31.0%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.59 36.0 4.17e-01 79.0% 86.7%
8evkA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.58 36.0 3.02e-01 80.6% 35.2%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.57 36.0 3.57e-01 83.9% 60.0%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 43.0 2.95e-01 82.3% 45.5%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.55 41.0 3.82e-01 80.6% 93.8%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 41.0 2.89e-01 83.9% 95.5%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.71e-01 87.1% 61.0%
4re2A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 2.82e-01 100.0% 73.4%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 45.0 4.25e-01 91.9% 90.7%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.53 48.0 3.41e-01 100.0% 63.7%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.53 36.0 3.86e-01 71.0% 92.6%
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 35.0 3.42e-01 85.5% 61.4%
1uzcA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.51 34.0 3.36e-01 77.4% 63.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238338 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.75 52.0 4.86e-01 72.6% 94.7%
3468850 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 4.89e-01 100.0% 46.4%
3326022 3004.1.1.0 ↗ alpha bundles › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain 0.71 59.0 5.39e-01 95.2% 70.0%
3684676 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 58.0 4.70e-01 100.0% 48.3%
3421266 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 61.0 4.87e-01 100.0% 61.7%
3442072 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.68 61.0 4.81e-01 100.0% 59.2%
3455132 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.65 58.0 4.64e-01 100.0% 61.7%
4567935 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 48.0 4.80e-01 93.5% 78.5%
4465067 6058.1.1.1 ↗ alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › DAO_C 0.59 45.0 3.59e-01 85.5% 57.0%
10060 2007.5.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › SASA 0.58 49.0 3.20e-01 95.2% 97.2%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.57 42.0 3.34e-01 82.3% 88.7%
2427244 244.1.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › CH 0.56 43.0 3.73e-01 83.9% 68.0%
3436081 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 41.0 3.96e-01 91.9% 69.9%
2865 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.55 40.0 3.67e-01 79.0% 68.6%
3441839 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 40.0 3.87e-01 91.9% 68.9%
4664482 101.1.1.99 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 0.54 35.0 3.36e-01 71.0% 56.0%
3627903 5.1.11.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_HPS5 0.54 43.0 2.63e-01 93.5% 96.0%
4579743 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.54 36.0 3.27e-01 87.1% 50.6%
3626406 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.52 44.0 3.00e-01 100.0% 47.7%
2794883 3144.1.1.1 ↗ alpha arrays › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS_linker_poly 0.52 39.0 2.75e-01 87.1% 36.8%