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IMGVR_UViG_3300002123_000034-3300002123-C687J26634_1000024126

Arc-Vir

IMGVR_UViG_3300002123_000034-3300002123-C687J26634_1000024126

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-67
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 4.71e-01 81.7% 54.5%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 50.0 4.65e-01 81.7% 53.9%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 49.0 4.88e-01 81.7% 65.6%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 4.71e-01 81.7% 57.7%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.25e-01 81.7% 74.1%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 4.04e-01 80.0% 37.6%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 58.0 4.57e-01 100.0% 40.8%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 48.0 4.48e-01 81.7% 53.9%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.89e-01 81.7% 66.7%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.91e-01 81.7% 64.8%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 55.0 4.55e-01 100.0% 46.9%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 4.94e-01 81.7% 71.4%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 4.19e-01 81.7% 55.7%
2di3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 4.53e-01 81.7% 60.0%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 4.53e-01 81.7% 69.6%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.89e-01 91.7% 69.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.05e-01 81.7% 40.8%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 48.0 3.39e-01 75.0% 64.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.77e-01 86.7% 74.0%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.77e-01 100.0% 81.0%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.76e-01 91.7% 72.2%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.59e-01 98.3% 66.7%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.05e-01 81.7% 54.0%
5du9B02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.62 50.0 3.41e-01 90.0% 85.7%
2jgpA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.61 49.0 3.33e-01 90.0% 76.4%
3dciA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 50.0 3.56e-01 96.7% 93.7%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 51.0 4.89e-01 100.0% 81.4%
1l5aA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.61 47.0 3.29e-01 85.0% 83.6%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.04e-01 86.7% 52.0%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.04e-01 98.3% 58.0%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.19e-01 98.3% 64.6%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.57 38.0 3.38e-01 91.7% 46.2%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.57 45.0 4.15e-01 100.0% 67.5%
7emyA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.57 46.0 3.05e-01 91.7% 73.8%
1f75A00 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.56 46.0 3.11e-01 88.3% 86.6%
1u8vB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 39.0 2.66e-01 75.0% 85.9%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 3.65e-01 96.7% 49.3%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.55 43.0 3.78e-01 86.7% 73.6%
3mcwA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.53 45.0 3.23e-01 100.0% 80.5%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.53 45.0 3.49e-01 100.0% 58.2%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 39.0 2.43e-01 86.7% 16.2%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 44.0 2.96e-01 96.7% 41.2%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.81e-01 93.3% 82.1%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.51 42.0 2.55e-01 96.7% 19.3%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 43.0 2.99e-01 100.0% 59.7%
1b0uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 2.89e-01 98.3% 27.1%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.51 41.0 4.24e-01 98.3% 100.0%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 2.94e-01 83.3% 81.8%
7paxA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.50 40.0 2.77e-01 98.3% 72.1%
2hjhA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.50 34.0 2.81e-01 71.7% 100.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4588401 101.1.2.582 alpha arrays › HTH › HTH › winged helix domain › PF30253 0.77 52.0 5.93e-01 81.7% 93.3%
4978526 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 48.0 4.29e-01 81.7% 47.1%
3588934 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 57.0 5.62e-01 100.0% 80.0%
5040772 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 51.0 5.68e-01 81.7% 97.8%
4547857 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 63.0 5.72e-01 100.0% 76.2%
5026926 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.52e-01 81.7% 62.2%
4989162 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.63 51.0 4.78e-01 96.7% 70.7%
4142759 101.1.2.762 alpha arrays › HTH › HTH › winged helix domain › PF25863 0.63 48.0 4.11e-01 86.7% 50.0%
5078708 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.61 45.0 4.24e-01 81.7% 64.0%
4057369 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.61 47.0 3.62e-01 98.3% 36.4%
4286215 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 44.0 4.31e-01 100.0% 73.8%
4251581 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.60 44.0 4.34e-01 100.0% 73.8%
3372020 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.60 42.0 3.85e-01 90.0% 56.2%
3516793 101.1.2.197 alpha arrays › HTH › HTH › winged helix domain › APAF-1-like_WHD 0.59 51.0 4.22e-01 96.7% 61.0%
4288189 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.59 41.0 4.09e-01 93.3% 69.2%
4025308 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 49.0 4.34e-01 98.3% 70.0%
4046076 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.58 41.0 3.47e-01 93.3% 42.9%
3385908 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.86e-01 86.7% 58.0%
5044634 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 42.0 3.37e-01 80.0% 55.0%
3251874 7534.1.1.1 a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.57 46.0 2.98e-01 86.7% 77.3%
4985930 7534.1.1.1 a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.55 44.0 2.81e-01 86.7% 69.5%
4557606 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.55 42.0 3.70e-01 98.3% 54.4%
4183916 2004.1.1.59 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.55 45.0 3.19e-01 98.3% 87.4%
3384077 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.54 47.0 4.10e-01 95.0% 70.0%
3586839 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.54 46.0 3.14e-01 100.0% 40.4%
3289939 2003.1.2.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 45.0 3.10e-01 100.0% 84.4%
4585171 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.54 41.0 4.22e-01 100.0% 89.1%
5062173 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.41e-01 95.0% 44.3%
4391818 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.54 42.0 3.81e-01 100.0% 61.2%
3629800 101.26.1.1 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.54 43.0 4.33e-01 86.7% 100.0%
3357775 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.54 45.0 3.98e-01 95.0% 70.0%
5059378 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 45.0 3.07e-01 100.0% 27.4%
3382543 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.99e-01 95.0% 81.1%
4944737 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 4.00e-01 95.0% 72.0%
5083545 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 46.0 3.05e-01 100.0% 25.7%
3788382 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.53 45.0 4.18e-01 100.0% 73.8%
3347271 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.53 45.0 3.35e-01 95.0% 38.1%
3587729 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.86e-01 91.7% 65.9%
4346702 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.52 41.0 2.69e-01 96.7% 43.6%
3567222 376.1.1.8 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.52 35.0 3.15e-01 76.7% 50.6%
3804069 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.51 43.0 3.75e-01 95.0% 60.0%
5063351 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 44.0 3.01e-01 100.0% 26.4%
4943312 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 43.0 2.90e-01 100.0% 26.3%
4406283 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.51 43.0 4.18e-01 100.0% 84.3%
3519990 7534.1.1.1 a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.50 43.0 3.08e-01 100.0% 95.4%
3955313 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.50 43.0 2.93e-01 100.0% 26.9%