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IMGVR_UViG_3300002123_000034-3300002123-C687J26634_100002417
Arc-VirIMGVR_UViG_3300002123_000034-3300002123-C687J26634_100002417
Identity
- Kingdom:
- archaea
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-80
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.91 | 66.0 | 7.14e-01 | 75.9% | 91.3% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.88 | 65.0 | 6.74e-01 | 77.8% | 84.3% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.85 | 56.0 | 5.95e-01 | 72.2% | 77.1% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 66.0 | 4.50e-01 | 83.3% | 27.5% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.83 | 66.0 | 5.59e-01 | 85.2% | 54.7% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.80 | 63.0 | 4.98e-01 | 87.0% | 73.2% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 60.0 | 6.21e-01 | 90.7% | 96.1% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 58.0 | 5.15e-01 | 87.0% | 61.5% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.73 | 51.0 | 5.06e-01 | 74.1% | 73.2% |
| 1zhxA04 | 3.30.70.3490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 58.0 | 4.40e-01 | 88.9% | 37.8% |
| 1dd3A01 | 1.20.5.710 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.72 | 54.0 | 5.35e-01 | 83.3% | 77.2% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 50.0 | 4.74e-01 | 75.9% | 65.2% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.70 | 58.0 | 4.29e-01 | 92.6% | 35.2% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.70 | 60.0 | 4.18e-01 | 96.3% | 87.4% |
| 2yfkA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.70 | 61.0 | 4.16e-01 | 100.0% | 74.0% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.69 | 60.0 | 4.47e-01 | 100.0% | 49.3% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.68 | 57.0 | 4.53e-01 | 100.0% | 62.8% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.67 | 59.0 | 4.51e-01 | 94.4% | 76.7% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.67 | 50.0 | 4.88e-01 | 81.5% | 76.3% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.62 | 45.0 | 4.66e-01 | 88.9% | 85.7% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.62 | 47.0 | 4.16e-01 | 87.0% | 85.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3692454 | 192.1.1.29 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Es2 | 0.89 | 60.0 | 6.00e-01 | 70.4% | 70.9% |
| 3375617 | 192.5.1.30 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF641 | 0.85 | 64.0 | 5.58e-01 | 81.5% | 56.2% |
| 3464912 | 192.8.1.359 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 | 0.83 | 71.0 | 5.83e-01 | 94.4% | 92.6% |
| 4212526 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.82 | 73.0 | 5.51e-01 | 96.3% | 91.7% |
| 3943776 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.80 | 62.0 | 4.65e-01 | 85.2% | 36.2% |
| 3249094 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.74 | 64.0 | 3.80e-01 | 98.1% | 69.5% |
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.74 | 61.0 | 5.70e-01 | 90.7% | 75.8% |
| 3651664 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.73 | 63.0 | 3.81e-01 | 98.1% | 81.6% |
| 3685792 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.73 | 64.0 | 3.81e-01 | 100.0% | 78.8% |
| 3338842 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.73 | 63.0 | 3.79e-01 | 98.1% | 80.3% |
| 3742387 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.72 | 63.0 | 3.80e-01 | 100.0% | 80.2% |
| 3719136 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.72 | 63.0 | 3.76e-01 | 100.0% | 79.2% |
| 3483545 | 4291.1.1.0 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein | 0.72 | 61.0 | 3.66e-01 | 98.1% | 67.7% |
| 4124807 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.70 | 59.0 | 5.05e-01 | 96.3% | 63.3% |
| 3527138 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.70 | 60.0 | 3.64e-01 | 100.0% | 78.0% |
| 5052262 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 56.0 | 5.08e-01 | 94.4% | 69.3% |
| 5058934 | 2004.1.1.1221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 | 0.66 | 49.0 | 3.08e-01 | 81.5% | 14.1% |
| 5034715 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.61 | 54.0 | 3.41e-01 | 100.0% | 83.2% |