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IMGVR_UViG_3300002149_000177-3300002149-C687J26657_100015581

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300002149_000177-3300002149-C687J26657_100015581 ↗
Kingdom:: archaea

Quality

60.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 117-257

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kx7A00	3.40.50.11620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase RcsD, RcsD-ABL domain	0.64	41.0	4.51e-01	99.3%	80.2%
5gqsA00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.54	35.0	4.21e-01	100.0%	100.0%
7l4aA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	49.0	4.23e-01	100.0%	97.7%
1np6B01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	46.0	4.74e-01	100.0%	96.3%
3ky8A01	3.40.430.10	Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A	0.53	41.0	3.90e-01	83.7%	100.0%
6ln3A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	48.0	4.24e-01	100.0%	97.0%
3uk7A01	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.51	45.0	4.14e-01	99.3%	98.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3944981	2007.1.3.8 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › RcsD_ABL	0.63	40.0	4.42e-01	100.0%	79.1%
4009379	2007.1.3.7 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › RcsC	0.62	41.0	4.39e-01	100.0%	78.3%
5071195	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.56	42.0	4.37e-01	87.9%	85.4%
None	—		0.53	43.0	3.96e-01	100.0%	66.7%
4935046	2004.1.1.97 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB	0.51	44.0	4.61e-01	100.0%	100.0%
5032304	2004.1.1.97 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB	0.51	46.0	3.94e-01	100.0%	73.9%
5019554	2007.1.1.20 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Catalase_C	0.51	45.0	4.25e-01	100.0%	88.0%
3629466	7515.1.1.6 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest	0.51	46.0	3.66e-01	100.0%	92.3%
4960131	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.50	40.0	3.43e-01	85.8%	77.4%
5018603	2006.1.6.15 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58	0.50	44.0	3.82e-01	98.6%	93.9%

D2 medium residues 338-394

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2c5iT00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.84	63.0	5.22e-01	78.9%	52.1%
4e6nA02	6.10.140.1010	Special › Helix non-globular › Helix Hairpins ›	0.82	61.0	5.81e-01	78.9%	78.8%
4h63K00	1.10.287.3490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.72	52.0	4.45e-01	78.9%	51.0%
4nphA02	1.20.1270.330	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.67	46.0	4.23e-01	71.9%	100.0%
1gcvA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.66	46.0	3.38e-01	71.9%	65.0%
3ip3A02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.52	40.0	2.83e-01	89.5%	80.8%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4401282	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.85	66.0	5.06e-01	80.7%	47.0%
3224581	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.85	67.0	5.80e-01	84.2%	61.2%
3620604	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.84	67.0	5.74e-01	84.2%	61.2%
3967855	160.1.1.3 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C	0.71	47.0	4.26e-01	78.9%	52.0%
3195747	3788.1.1.0 ↗	alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr)	0.65	47.0	4.39e-01	75.4%	65.7%
4295116	6130.1.1.1 ↗	alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N	0.65	47.0	4.36e-01	78.9%	60.0%
3954637	101.1.2.309 ↗	alpha arrays › HTH › HTH › winged helix domain › GPAT_C	0.60	45.0	3.76e-01	80.7%	76.0%