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IMGVR_UViG_3300002149_000177-3300002149-C687J26657_1000155811

Arc-Vir

IMGVR_UViG_3300002149_000177-3300002149-C687J26657_1000155811

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-43_147-194
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 41.0 4.60e-01 83.3% 72.7%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.72 34.0 3.78e-01 94.0% 57.4%
7pbkA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 35.0 2.56e-01 84.5% 17.6%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 37.0 3.92e-01 88.1% 59.2%
3lsgA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 39.0 4.84e-01 88.1% 100.0%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 42.0 4.73e-01 90.5% 93.4%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 43.0 4.06e-01 95.2% 56.7%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.63 41.0 3.87e-01 100.0% 55.0%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 44.0 4.06e-01 98.8% 58.3%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.60 37.0 3.70e-01 78.6% 59.8%
1kxpD02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 33.0 3.27e-01 75.0% 51.1%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.56 35.0 4.15e-01 82.1% 94.5%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 40.0 4.12e-01 79.8% 79.7%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 42.0 4.07e-01 81.0% 81.1%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.55 44.0 3.59e-01 88.1% 67.3%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.54 48.0 3.65e-01 100.0% 66.8%
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.54 39.0 3.52e-01 76.2% 81.7%
3mpiA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 42.0 3.81e-01 88.1% 69.4%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.52 38.0 3.52e-01 77.4% 67.9%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 4.34e-01 92.9% 94.7%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.52 45.0 4.19e-01 95.2% 86.8%
4evqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 36.0 2.77e-01 72.6% 90.6%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 41.0 3.56e-01 88.1% 60.9%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 44.0 4.04e-01 95.2% 75.0%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.50 44.0 3.76e-01 98.8% 68.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4455989 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.73 42.0 4.76e-01 82.1% 75.4%
3945549 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.71 42.0 5.29e-01 89.3% 100.0%
1758881 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.71 42.0 4.66e-01 82.1% 73.1%
3974443 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.71 41.0 4.76e-01 81.0% 80.0%
4192695 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.71 42.0 5.22e-01 85.7% 100.0%
3969487 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 41.0 5.20e-01 83.3% 100.0%
3976640 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.70 42.0 4.68e-01 83.3% 76.9%
4009601 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 42.0 4.62e-01 84.5% 72.9%
3947925 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 41.0 5.15e-01 85.7% 100.0%
4465858 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 41.0 5.18e-01 85.7% 100.0%
4319964 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 45.0 5.37e-01 90.5% 100.0%
4007503 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.69 41.0 5.05e-01 85.7% 100.0%
3974068 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.68 46.0 5.02e-01 95.2% 84.1%
3945774 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.68 41.0 5.04e-01 86.9% 100.0%
3279955 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 48.0 3.34e-01 95.2% 23.0%
3943189 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.68 43.0 5.14e-01 94.0% 98.2%
3283554 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 40.0 4.88e-01 88.1% 98.0%
4134806 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 41.0 4.62e-01 85.7% 80.0%
3984272 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 39.0 4.86e-01 84.5% 98.0%
3280590 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 39.0 4.55e-01 85.7% 81.7%
3968945 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 42.0 4.99e-01 90.5% 98.2%
4010517 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.66 40.0 4.86e-01 85.7% 100.0%
3947191 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.66 42.0 5.00e-01 94.0% 100.0%
4591310 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.66 43.0 4.66e-01 94.0% 81.4%
3285933 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 42.0 4.85e-01 90.5% 91.7%
3972910 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 45.0 5.05e-01 92.9% 93.8%
3966470 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 45.0 3.85e-01 95.2% 44.4%
3970263 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 41.0 4.74e-01 90.5% 90.0%
3969859 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 43.0 4.92e-01 90.5% 96.7%
3514805 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 41.0 4.89e-01 94.0% 100.0%
4114758 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 43.0 4.76e-01 91.7% 89.1%
4479024 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 38.0 4.70e-01 92.9% 100.0%
4211867 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 43.0 4.01e-01 94.0% 53.6%
1762220 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 40.0 4.61e-01 90.5% 89.7%
3944775 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 43.0 4.98e-01 95.2% 98.3%
3983051 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.63 41.0 4.85e-01 95.2% 100.0%
4009138 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 39.0 4.46e-01 89.3% 86.7%
3969367 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 43.0 4.87e-01 95.2% 100.0%
3283005 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 40.0 4.69e-01 90.5% 100.0%
3980475 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 38.0 4.52e-01 89.3% 94.5%
3971593 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 38.0 4.32e-01 89.3% 85.0%
3949057 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 42.0 3.96e-01 95.2% 56.2%
3289678 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 41.0 4.71e-01 91.7% 96.7%
3984092 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.61 41.0 4.38e-01 90.5% 81.4%
4007664 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.61 41.0 4.38e-01 90.5% 81.4%
3979083 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.61 39.0 4.48e-01 90.5% 93.2%
4030908 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.60 40.0 4.24e-01 94.0% 77.3%
1297277 4016.1.1.1 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.58 39.0 3.07e-01 82.1% 32.6%
3577067 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 52.0 4.49e-01 100.0% 83.1%
3412630 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.56 48.0 4.22e-01 100.0% 65.2%
3205783 210.1.2.4 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.55 47.0 3.13e-01 98.8% 28.9%
4588603 109.1.1.1 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.53 42.0 3.32e-01 94.0% 42.4%
3973662 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 43.0 4.12e-01 91.7% 81.0%
3203376 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 43.0 3.22e-01 100.0% 86.5%
5009628 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 40.0 3.07e-01 85.7% 69.7%
D2 high residues 49-142
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mpgA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.85 75.0 6.93e-01 94.7% 97.5%
2h56A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.82 76.0 7.07e-01 100.0% 98.2%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.82 73.0 6.58e-01 96.8% 95.2%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.57 33.0 3.93e-01 89.4% 88.3%
4akgA06 1.10.8.710 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain 0.54 41.0 3.99e-01 100.0% 73.8%
5fc1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 44.0 2.88e-01 89.4% 46.8%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 34.0 3.27e-01 87.2% 56.2%
3aqbA00 1.20.120.1450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 37.0 3.33e-01 76.6% 78.5%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 32.0 3.44e-01 91.5% 79.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.82 75.0 5.70e-01 96.8% 56.5%
3984116 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.82 77.0 5.90e-01 100.0% 61.0%
3952367 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 72.0 5.39e-01 96.8% 54.0%
None 0.80 71.0 5.45e-01 96.8% 56.6%
4120431 190.1.1.7 alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox 0.65 46.0 4.19e-01 87.2% 53.8%
4932527 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.59 52.0 3.58e-01 100.0% 32.3%
4940297 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.57 50.0 3.45e-01 100.0% 43.3%
4573533 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.56 43.0 3.80e-01 83.0% 84.3%
4540230 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.55 48.0 3.26e-01 100.0% 37.7%
4597634 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.54 38.0 4.08e-01 87.2% 87.5%
4519670 5045.1.1.3 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I 0.52 42.0 3.11e-01 88.3% 76.2%
3989298 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.52 39.0 3.29e-01 79.8% 50.9%
3986518 604.12.1.14 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MASE1 0.52 44.0 3.43e-01 96.8% 64.3%
5076317 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.51 41.0 3.71e-01 87.2% 90.0%
5016355 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.50 38.0 3.40e-01 88.3% 55.6%
3185353 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.50 38.0 3.41e-01 88.3% 57.7%