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IMGVR_UViG_3300002168_000159-3300002168-JGI24712J26585_100265242

Arc-Vir

IMGVR_UViG_3300002168_000159-3300002168-JGI24712J26585_100265242

Identity

Kingdom:
archaea

Quality

80.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-82
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.61 43.0 3.19e-01 74.0% 84.1%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 42.0 3.49e-01 72.6% 51.2%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 43.0 3.83e-01 82.2% 86.5%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.56 38.0 3.25e-01 71.2% 44.7%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.16e-01 74.0% 85.2%
2gu0A02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.52 40.0 3.26e-01 87.7% 85.5%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.67e-01 82.2% 69.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 40.0 3.44e-01 86.3% 83.7%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 40.0 3.38e-01 86.3% 81.5%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.63e-01 91.8% 68.0%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 37.0 2.99e-01 89.0% 41.4%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 39.0 2.54e-01 90.4% 41.0%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 44.0 3.58e-01 98.6% 97.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4314504 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 56.0 4.54e-01 98.6% 48.1%
1952942 3884.1.1.1 ↗ a+b two layers › Immunity protein NMB0503 › Immunity protein NMB0503 › Immunity protein NMB0503 › CdiI_4 0.66 54.0 4.53e-01 87.7% 53.3%
4360830 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.63 47.0 2.96e-01 80.8% 38.1%
4408604 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.62 45.0 3.16e-01 78.1% 28.4%
3502952 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.60 50.0 4.51e-01 90.4% 76.0%
3995481 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.59 38.0 3.42e-01 72.6% 48.0%
4032202 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.58 43.0 3.26e-01 78.1% 79.4%
3278159 2004.1.1.525 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B 0.58 46.0 2.92e-01 87.7% 65.6%
3584039 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.57 48.0 3.04e-01 93.2% 39.0%
4451022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.92e-01 90.4% 56.7%
3741520 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.57 45.0 2.88e-01 86.3% 28.6%
3219739 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 42.0 2.78e-01 83.6% 41.7%
3057485 71.1.1.10 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.55 44.0 3.46e-01 86.3% 73.4%
3611119 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.55 44.0 3.61e-01 86.3% 91.9%
3987959 4097.1.1.1 ↗ a+b two layers › Lp2179-like › Lp2179-like › Lp2179-like › DUF1831 0.55 37.0 3.19e-01 71.2% 44.3%
3169596 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 38.0 3.16e-01 72.6% 59.2%
4002571 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 43.0 3.67e-01 86.3% 83.3%
3669779 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 41.0 3.41e-01 84.9% 80.0%
161775 312.1.1.3 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › Rota_NS35_C 0.53 42.0 3.31e-01 87.7% 85.7%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 39.0 4.06e-01 76.7% 100.0%
3488366 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.53 41.0 3.38e-01 89.0% 63.2%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 42.0 3.52e-01 86.3% 89.6%
5052424 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 41.0 3.44e-01 93.2% 94.3%
4092770 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 3.18e-01 72.6% 51.0%
3538869 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 40.0 3.19e-01 90.4% 39.4%
3705941 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 40.0 3.92e-01 86.3% 96.2%
3637753 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 38.0 2.74e-01 82.2% 53.5%
4889666 11.2.1.117 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y 0.50 34.0 3.02e-01 72.6% 45.8%