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IMGVR_UViG_3300002171_000033-3300002171-JGI24732J26686_100044423
Arc-VirIMGVR_UViG_3300002171_000033-3300002171-JGI24732J26686_100044423
Identity
- Kingdom:
- archaea
Quality
79.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-41
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.76 | 52.0 | 4.33e-01 | 74.4% | 43.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.70 | 57.0 | 3.87e-01 | 100.0% | 39.5% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.69 | 57.0 | 4.38e-01 | 100.0% | 94.9% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.68 | 56.0 | 4.26e-01 | 97.4% | 70.1% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.67 | 56.0 | 4.34e-01 | 100.0% | 75.5% |
| 5c9iD01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.64 | 52.0 | 3.49e-01 | 89.7% | 41.6% |
| 2wqlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 55.0 | 3.70e-01 | 100.0% | 94.1% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.63 | 54.0 | 3.71e-01 | 100.0% | 86.4% |
| 1utaA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.62 | 47.0 | 4.03e-01 | 94.9% | 79.2% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 46.0 | 3.41e-01 | 100.0% | 27.8% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 50.0 | 3.80e-01 | 100.0% | 90.8% |
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.60 | 47.0 | 3.94e-01 | 97.4% | 47.5% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 48.0 | 3.03e-01 | 89.7% | 70.3% |
| 1mbyA00 | 2.40.50.930 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 45.0 | 3.85e-01 | 92.3% | 76.0% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.59 | 53.0 | 4.04e-01 | 100.0% | 70.5% |
| 2yfqB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 43.0 | 3.14e-01 | 94.9% | 25.0% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 3.39e-01 | 92.3% | 73.3% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.58 | 48.0 | 3.70e-01 | 92.3% | 84.3% |
| 3df7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 50.0 | 3.40e-01 | 97.4% | 27.7% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.57 | 48.0 | 2.86e-01 | 100.0% | 96.1% |
| 1iowA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 51.0 | 3.40e-01 | 100.0% | 32.9% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 42.0 | 3.55e-01 | 97.4% | 83.0% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 40.0 | 3.28e-01 | 97.4% | 36.5% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 42.0 | 3.17e-01 | 84.6% | 52.6% |
| 3ou2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 40.0 | 2.68e-01 | 89.7% | 48.0% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 41.0 | 3.37e-01 | 92.3% | 67.1% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.52 | 41.0 | 3.88e-01 | 94.9% | 70.0% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 39.0 | 3.43e-01 | 84.6% | 83.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3784067 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.75 | 53.0 | 3.71e-01 | 74.4% | 26.7% |
| 4301114 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.69 | 59.0 | 4.98e-01 | 97.4% | 92.3% |
| 3987094 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.68 | 54.0 | 3.81e-01 | 89.7% | 31.7% |
| 3291096 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.66 | 53.0 | 4.82e-01 | 92.3% | 67.3% |
| 3623139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.66 | 50.0 | 3.13e-01 | 94.9% | 14.4% |
| 4928783 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.66 | 55.0 | 4.83e-01 | 100.0% | 100.0% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.66 | 54.0 | 3.68e-01 | 100.0% | 24.1% |
| 3656669 | 207.1.1.245 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, LRR_At5g56370, DUF7885 | 0.65 | 45.0 | 2.48e-01 | 79.5% | 4.4% |
| 3272887 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 53.0 | 3.63e-01 | 92.3% | 49.6% |
| 3288081 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.64 | 54.0 | 4.60e-01 | 97.4% | 61.5% |
| 3454374 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.64 | 48.0 | 2.82e-01 | 79.5% | 29.7% |
| 3600035 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 48.0 | 4.07e-01 | 82.1% | 49.2% |
| 3806670 | 108.1.1.20 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like | 0.62 | 47.0 | 3.41e-01 | 82.1% | 51.3% |
| 3475233 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.62 | 55.0 | 4.05e-01 | 100.0% | 40.0% |
| 3968868 | 4104.1.1.1 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 | 0.61 | 47.0 | 4.01e-01 | 97.4% | 48.0% |
| 3919983 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.60 | 52.0 | 3.12e-01 | 100.0% | 43.1% |
| 4191800 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.60 | 51.0 | 4.49e-01 | 92.3% | 74.5% |
| 4420323 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 49.0 | 3.93e-01 | 100.0% | 81.1% |
| 3216070 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.59 | 47.0 | 2.79e-01 | 89.7% | 27.3% |
| 3276749 | 2007.1.2.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp | 0.59 | 51.0 | 3.19e-01 | 100.0% | 17.7% |
| 4955569 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.58 | 45.0 | 3.01e-01 | 89.7% | 76.6% |
| 3574069 | 604.12.1.62 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA | 0.57 | 51.0 | 3.56e-01 | 100.0% | 71.2% |
| 3444901 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.55 | 50.0 | 3.20e-01 | 100.0% | 30.3% |
| 3899253 | 3957.1.1.0 ↗ | a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 | 0.55 | 49.0 | 4.68e-01 | 100.0% | 95.6% |
| 5006204 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.55 | 48.0 | 3.06e-01 | 100.0% | 35.1% |
| 3821553 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 44.0 | 4.02e-01 | 89.7% | 68.0% |
| 3300895 | 375.13.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › ubiquitin | 0.53 | 46.0 | 4.10e-01 | 97.4% | 74.5% |
| 3453248 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 42.0 | 3.90e-01 | 97.4% | 76.4% |
| 3933293 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 42.0 | 3.74e-01 | 89.7% | 75.9% |
| 3518192 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 42.0 | 4.04e-01 | 89.7% | 80.0% |
| 3357798 | 3082.1.1.3 ↗ | extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › Pro_isomerase | 0.52 | 41.0 | 3.97e-01 | 89.7% | 93.2% |
| 1224463 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.51 | 37.0 | 3.60e-01 | 94.9% | 71.4% |
| 3308430 | 108.1.1.20 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like | 0.51 | 37.0 | 2.83e-01 | 79.5% | 33.0% |
| 3373091 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.50 | 41.0 | 3.78e-01 | 89.7% | 72.0% |