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IMGVR_UViG_3300002171_000033-3300002171-JGI24732J26686_100044427

Arc-Vir

IMGVR_UViG_3300002171_000033-3300002171-JGI24732J26686_100044427

Identity

Kingdom:
archaea

Quality

53.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-154
PDB
Domain cluster: rep: IMGVR_UViG_3300009667_000782-3300009667-Ga0116147_10168524__D108-153
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 36.0 4.04e-01 92.0% 80.0%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 40.0 2.72e-01 70.0% 52.9%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 49.0 3.66e-01 96.0% 59.5%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 49.0 3.96e-01 100.0% 56.6%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.55 38.0 3.20e-01 100.0% 40.9%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 35.0 3.32e-01 86.0% 50.7%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.67e-01 100.0% 80.6%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.54e-01 100.0% 49.1%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.88e-01 100.0% 73.8%
2gb5A01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.52 45.0 3.36e-01 100.0% 61.7%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.03e-01 96.0% 94.8%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 42.0 3.13e-01 90.0% 66.4%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 39.0 3.54e-01 100.0% 59.7%
2mnjB00 2.60.40.4160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 2.89e-01 86.0% 39.8%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.74e-01 84.0% 28.3%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.50 40.0 3.19e-01 100.0% 73.2%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 38.0 3.32e-01 92.0% 50.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043002 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.80 48.0 5.00e-01 90.0% 66.7%
4185726 375.1.1.213 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.76 46.0 4.84e-01 90.0% 66.7%
3262703 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 46.0 4.65e-01 98.0% 66.0%
4955635 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.67 36.0 3.36e-01 92.0% 40.6%
5066865 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 41.0 4.13e-01 96.0% 64.0%
4263366 2004.1.1.219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.64 49.0 3.07e-01 100.0% 16.7%
4338996 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.62 48.0 4.53e-01 100.0% 70.0%
4952416 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.60 45.0 3.40e-01 82.0% 82.4%
3281773 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.60 52.0 2.99e-01 98.0% 13.1%
5080411 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 45.0 4.21e-01 86.0% 96.9%
3716557 75.1.1.1 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.58 41.0 2.66e-01 74.0% 31.6%
3732808 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.58 51.0 4.37e-01 100.0% 66.3%
4261906 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.57 39.0 2.56e-01 72.0% 21.4%
4261891 3454.1.1.8 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › TcpS 0.55 43.0 4.21e-01 94.0% 80.0%
3728776 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.53 37.0 3.43e-01 100.0% 54.3%
4295539 837.1.1.1 ↗ a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal_S16 0.52 33.0 2.69e-01 84.0% 30.5%