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IMGVR_UViG_3300002171_000033-3300002171-JGI24732J26686_100044431
Arc-VirIMGVR_UViG_3300002171_000033-3300002171-JGI24732J26686_100044431
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 503-563
Domain cluster:
rep: MH700630.1__AXP07737.1__SmphiM6_46__00045__D9-76
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.73 | 58.0 | 5.22e-01 | 85.2% | 80.7% |
| 2h21B01 | 3.90.1410.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 | 0.64 | 44.0 | 2.86e-01 | 70.5% | 52.9% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.59 | 45.0 | 3.43e-01 | 88.5% | 41.4% |
| 1xb2B02 | 3.30.479.20 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain | 0.57 | 48.0 | 3.80e-01 | 91.8% | 80.2% |
| 5ee0A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 39.0 | 2.92e-01 | 77.0% | 88.4% |
| 1kwiA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 3.88e-01 | 91.8% | 100.0% |
| 1k8rB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 38.0 | 3.53e-01 | 80.3% | 61.0% |
| 3bb7A02 | 3.30.910.30 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Peptidase C10 family | 0.52 | 37.0 | 3.02e-01 | 77.0% | 40.7% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 45.0 | 3.88e-01 | 95.1% | 96.8% |
| 1dl5A02 | 3.55.20.10 | Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain | 0.52 | 40.0 | 3.30e-01 | 85.2% | 80.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.78 | 53.0 | 4.70e-01 | 70.5% | 74.1% |
| 3948700 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.77 | 54.0 | 4.27e-01 | 73.8% | 49.2% |
| 3965880 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 58.0 | 5.06e-01 | 80.3% | 88.8% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 57.0 | 4.51e-01 | 78.7% | 55.7% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 51.0 | 5.04e-01 | 70.5% | 87.7% |
| 4966182 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.75 | 52.0 | 4.11e-01 | 72.1% | 48.0% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 56.0 | 4.54e-01 | 78.7% | 56.4% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 61.0 | 5.18e-01 | 90.2% | 72.2% |
| 4981807 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.74 | 57.0 | 4.20e-01 | 83.6% | 43.9% |
| 3963404 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.74 | 56.0 | 4.74e-01 | 80.3% | 83.2% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.73 | 55.0 | 5.44e-01 | 80.3% | 90.8% |
| 3317146 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 56.0 | 4.36e-01 | 82.0% | 63.7% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 52.0 | 4.43e-01 | 75.4% | 66.3% |
| 3981149 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 57.0 | 5.25e-01 | 86.9% | 83.5% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 52.0 | 4.76e-01 | 78.7% | 82.5% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.70 | 57.0 | 5.02e-01 | 86.9% | 76.5% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.69 | 57.0 | 4.90e-01 | 88.5% | 69.1% |
| 3952892 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.68 | 62.0 | 4.83e-01 | 100.0% | 76.0% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 44.0 | 4.06e-01 | 77.0% | 60.0% |
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.61 | 45.0 | 3.17e-01 | 78.7% | 27.0% |
| 4989310 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.60 | 45.0 | 3.14e-01 | 78.7% | 26.5% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.60 | 51.0 | 4.76e-01 | 95.1% | 78.7% |
| 8233 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.59 | 45.0 | 3.43e-01 | 88.5% | 41.4% |
| 2462317 | 4205.1.1.2 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › GAD-like,T6SS_Tdi1_C | 0.56 | 46.0 | 3.22e-01 | 95.1% | 38.0% |
| 3695527 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.52 | 44.0 | 3.58e-01 | 95.1% | 87.5% |
| 3789603 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 40.0 | 3.38e-01 | 88.5% | 63.6% |
D2
medium
residues 29-59_76-218
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.72 | 39.0 | 4.60e-01 | 78.7% | 73.2% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.64 | 24.0 | 4.00e-01 | 84.5% | 100.0% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 23.0 | 3.74e-01 | 94.3% | 90.3% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 20.0 | 3.78e-01 | 86.8% | 100.0% |
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.62 | 18.0 | 3.39e-01 | 86.8% | 91.3% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.62 | 23.0 | 3.70e-01 | 90.2% | 100.0% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.61 | 21.0 | 3.61e-01 | 77.0% | 100.0% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 21.0 | 3.44e-01 | 87.9% | 94.7% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 22.0 | 3.25e-01 | 91.4% | 77.5% |
| 2jngA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 22.0 | 3.19e-01 | 93.1% | 75.3% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 21.0 | 3.45e-01 | 88.5% | 100.0% |
| 2eczA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 24.0 | 3.60e-01 | 83.9% | 92.9% |
| 1igqB00 | 2.30.30.150 | Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain | 0.57 | 21.0 | 3.46e-01 | 93.7% | 96.5% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 23.0 | 3.46e-01 | 87.9% | 87.5% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 23.0 | 3.56e-01 | 90.8% | 98.5% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 22.0 | 3.55e-01 | 79.9% | 100.0% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 21.0 | 3.43e-01 | 78.7% | 100.0% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 20.0 | 3.40e-01 | 79.3% | 100.0% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 21.0 | 2.78e-01 | 97.1% | 62.5% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 22.0 | 3.32e-01 | 89.1% | 94.1% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 22.0 | 3.45e-01 | 78.2% | 100.0% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 22.0 | 3.42e-01 | 76.4% | 97.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4936291 | 4.1.1.487 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7205 | 0.67 | 23.0 | 3.67e-01 | 87.4% | 80.0% |
| 4963650 | 4.1.1.488 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7346 | 0.66 | 20.0 | 3.52e-01 | 79.9% | 81.8% |
| 3604145 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 21.0 | 3.53e-01 | 87.4% | 80.0% |
| 3519126 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 22.0 | 3.26e-01 | 88.5% | 66.3% |
| 3612090 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 23.0 | 3.88e-01 | 87.9% | 95.0% |
| 3222146 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.63 | 21.0 | 3.39e-01 | 87.4% | 78.5% |
| 3415020 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.61 | 21.0 | 3.06e-01 | 87.9% | 65.0% |
| 3555930 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.61 | 21.0 | 3.26e-01 | 87.9% | 74.3% |
| 3612184 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 21.0 | 3.49e-01 | 94.3% | 88.3% |
| 4941620 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 21.0 | 3.52e-01 | 87.4% | 90.0% |
| 5029655 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 21.0 | 3.47e-01 | 87.4% | 88.3% |
| 4956443 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 22.0 | 3.56e-01 | 87.9% | 91.7% |
| 4269256 | 4.1.1.245 ↗ | beta barrels › SH3 › SH3 › SH3 › SspH | 0.60 | 21.0 | 3.48e-01 | 88.5% | 88.3% |
| 4000280 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 21.0 | 3.49e-01 | 94.8% | 94.5% |
| 3580609 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.59 | 20.0 | 3.22e-01 | 87.4% | 79.7% |
| 3885050 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.58 | 21.0 | 2.17e-01 | 89.1% | 30.9% |
| 3820065 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 20.0 | 3.34e-01 | 87.4% | 92.7% |
| 3619215 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 20.0 | 2.65e-01 | 87.9% | 52.0% |
| 3931993 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 21.0 | 3.29e-01 | 94.3% | 88.3% |
| 4003171 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 26.0 | 3.67e-01 | 90.2% | 91.3% |
| 2717779 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.57 | 23.0 | 3.32e-01 | 78.7% | 79.3% |
| 5014317 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 22.0 | 3.12e-01 | 86.8% | 72.5% |
| 3530247 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 23.0 | 3.63e-01 | 86.2% | 100.0% |
| 3551576 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.56 | 25.0 | 3.55e-01 | 97.1% | 92.0% |
| 4082863 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 23.0 | 3.44e-01 | 82.2% | 91.4% |
| 3498357 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.55 | 22.0 | 3.38e-01 | 78.2% | 90.0% |
| 4629022 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.55 | 22.0 | 3.21e-01 | 99.4% | 84.3% |
| 4976092 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 27.0 | 3.55e-01 | 97.7% | 87.8% |
| 3930461 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 23.0 | 3.36e-01 | 93.1% | 89.3% |
| 3917464 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 22.0 | 3.50e-01 | 96.6% | 100.0% |
| 3416133 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 21.0 | 3.15e-01 | 81.6% | 82.7% |
| 4966131 | 4.1.3.1 ↗ | beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP | 0.53 | 26.0 | 3.14e-01 | 94.8% | 70.0% |
| 3484700 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.53 | 23.0 | 2.95e-01 | 92.0% | 65.0% |
| 3846212 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.53 | 24.0 | 3.33e-01 | 89.7% | 88.7% |
| 4547820 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 21.0 | 2.60e-01 | 98.3% | 54.3% |
| 3897602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 23.0 | 2.93e-01 | 98.9% | 68.4% |
| 3826746 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 23.0 | 3.20e-01 | 96.6% | 86.3% |
| 3695780 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.51 | 24.0 | 3.39e-01 | 98.3% | 93.8% |
| 3931160 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 28.0 | 3.19e-01 | 94.8% | 71.2% |
D3
medium
residues 253-321
Domain cluster:
rep: IMGVR_UViG_3300049638_000299-3300049638-Ga0499516_007266_7585_10071__D259-310