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IMGVR_UViG_3300002174_000336-3300002174-JGI24710J26742_100109092
Arc-VirIMGVR_UViG_3300002174_000336-3300002174-JGI24710J26742_100109092
Identity
- Kingdom:
- archaea
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-116
Domain cluster:
rep: IMGVR_UViG_3300000594_000001-3300000594-Draft_1000116__D7-13_116-199
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qzqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 46.0 | 5.68e-01 | 98.2% | 94.2% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.78 | 69.0 | 6.94e-01 | 100.0% | 92.9% |
| 6ku8A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.77 | 46.0 | 5.61e-01 | 97.3% | 94.2% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.69 | 59.0 | 6.20e-01 | 94.5% | 100.0% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.68 | 52.0 | 5.53e-01 | 79.1% | 94.7% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.66 | 55.0 | 5.60e-01 | 100.0% | 92.7% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 43.0 | 4.45e-01 | 100.0% | 73.5% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 51.0 | 4.64e-01 | 100.0% | 63.9% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.63 | 47.0 | 4.09e-01 | 96.4% | 51.2% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 43.0 | 3.67e-01 | 98.2% | 42.8% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.63 | 58.0 | 5.78e-01 | 100.0% | 94.8% |
| 2f91A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 49.0 | 4.94e-01 | 98.2% | 81.4% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 55.0 | 4.66e-01 | 100.0% | 76.5% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 47.0 | 4.52e-01 | 100.0% | 74.2% |
| 5fahA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 44.0 | 4.36e-01 | 99.1% | 78.6% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 43.0 | 4.39e-01 | 100.0% | 86.0% |
| 1fonA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 46.0 | 4.57e-01 | 100.0% | 88.1% |
| 1vq8B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 38.0 | 3.56e-01 | 75.5% | 73.0% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 46.0 | 4.65e-01 | 98.2% | 99.1% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.52e-01 | 72.7% | 75.3% |
| 1tj6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 37.0 | 3.67e-01 | 75.5% | 87.8% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 31.0 | 2.99e-01 | 97.3% | 53.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003311 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.85 | 80.0 | 8.06e-01 | 99.1% | 99.1% |
| 4500974 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.78 | 55.0 | 5.39e-01 | 100.0% | 66.7% |
| 119252 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.78 | 69.0 | 6.94e-01 | 100.0% | 92.9% |
| 4032883 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.75 | 66.0 | 6.73e-01 | 100.0% | 97.1% |
| 4316037 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.75 | 51.0 | 5.18e-01 | 100.0% | 70.0% |
| 3968432 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.74 | 53.0 | 5.41e-01 | 100.0% | 77.1% |
| 4988105 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.73 | 46.0 | 5.63e-01 | 91.8% | 98.6% |
| 3942928 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 52.0 | 5.88e-01 | 100.0% | 94.1% |
| 4669352 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 61.0 | 6.16e-01 | 100.0% | 91.8% |
| 3789214 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.69 | 48.0 | 4.90e-01 | 94.5% | 74.3% |
| 4030357 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.67 | 41.0 | 4.45e-01 | 76.4% | 73.3% |
| 3974369 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 46.0 | 5.19e-01 | 92.7% | 91.8% |
| 4988096 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 62.0 | 6.12e-01 | 100.0% | 98.2% |
| 3257612 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 58.0 | 4.81e-01 | 98.2% | 81.5% |
| 4234560 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.64 | 48.0 | 4.50e-01 | 100.0% | 64.4% |
| 3535347 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 47.0 | 4.70e-01 | 78.2% | 85.2% |
| 2595159 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.61 | 55.0 | 4.80e-01 | 99.1% | 80.1% |
| 4954552 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 54.0 | 4.83e-01 | 99.1% | 95.0% |
| 4260208 | 1.1.13.62 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 | 0.61 | 54.0 | 5.55e-01 | 94.5% | 100.0% |
| 4650190 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 43.0 | 3.22e-01 | 75.5% | 36.5% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.58 | 52.0 | 4.65e-01 | 99.1% | 91.5% |
| 3948350 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.58 | 48.0 | 5.07e-01 | 97.3% | 98.0% |
| 2475125 | 3071.1.1.7 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 | 0.56 | 49.0 | 4.34e-01 | 94.5% | 89.9% |
| 3391409 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 4.04e-01 | 99.1% | 62.6% |
| 3408679 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.55 | 46.0 | 3.60e-01 | 100.0% | 42.5% |
| 3776853 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.55 | 48.0 | 3.62e-01 | 94.5% | 83.8% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.54 | 48.0 | 4.90e-01 | 98.2% | 98.2% |
| 4957562 | 1.1.13.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 | 0.54 | 48.0 | 4.84e-01 | 100.0% | 98.2% |
| 3957568 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 37.0 | 3.89e-01 | 70.9% | 100.0% |
| 4052310 | 1.1.5.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 | 0.53 | 45.0 | 3.19e-01 | 94.5% | 86.9% |
| 5028431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 35.0 | 4.01e-01 | 80.0% | 93.8% |
| 3939955 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 34.0 | 3.38e-01 | 74.5% | 61.7% |
| 3428351 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.53 | 38.0 | 3.17e-01 | 88.2% | 42.1% |
| 4771581 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.52 | 44.0 | 3.94e-01 | 99.1% | 65.8% |
| 3806797 | 220.1.1.171 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7135 | 0.52 | 38.0 | 3.29e-01 | 75.5% | 64.8% |
| 3269002 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.53e-01 | 74.5% | 71.4% |