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IMGVR_UViG_3300002182_000326-3300002182-JGI24721J26819_1000535320
Arc-VirIMGVR_UViG_3300002182_000326-3300002182-JGI24721J26819_1000535320
Identity
- Kingdom:
- archaea
Quality
53.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 113-175
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.69 | 50.0 | 4.07e-01 | 76.2% | 70.2% |
| 2biiA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 56.0 | 4.03e-01 | 92.1% | 92.2% |
| 2e50B02 | 3.30.1120.90 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein | 0.61 | 42.0 | 3.53e-01 | 73.0% | 70.3% |
| 1g6zA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 40.0 | 3.96e-01 | 73.0% | 81.4% |
| 4npsA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 42.0 | 4.41e-01 | 88.9% | 84.5% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.55 | 35.0 | 3.94e-01 | 73.0% | 89.1% |
| 4x9xA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.53 | 37.0 | 3.05e-01 | 73.0% | 80.7% |
| 4mf9B01 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.53 | 43.0 | 3.37e-01 | 98.4% | 69.1% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 37.0 | 2.99e-01 | 77.8% | 65.6% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 36.0 | 2.54e-01 | 76.2% | 34.8% |
| 3ttcA03 | 3.30.420.360 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 44.0 | 3.61e-01 | 100.0% | 77.7% |
| 5ejrA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 35.0 | 3.30e-01 | 73.0% | 93.8% |
| 6gvdA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 38.0 | 2.54e-01 | 88.9% | 79.7% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.50 | 38.0 | 2.81e-01 | 85.7% | 86.6% |
| 2jh3A03 | 3.30.1360.190 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 41.0 | 3.37e-01 | 88.9% | 92.0% |
| 6lw5A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 42.0 | 2.80e-01 | 100.0% | 53.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4340748 | 3018.1.1.3 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › PF28558 | 0.66 | 45.0 | 4.11e-01 | 71.4% | 80.0% |
| 4587906 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.66 | 46.0 | 3.95e-01 | 73.0% | 78.0% |
| 4141443 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.65 | 45.0 | 3.76e-01 | 71.4% | 70.2% |
| 3387987 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.65 | 46.0 | 4.00e-01 | 74.6% | 62.1% |
| 4166150 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.64 | 44.0 | 3.69e-01 | 71.4% | 72.4% |
| 4954485 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 45.0 | 3.48e-01 | 73.0% | 41.5% |
| 4388719 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.64 | 44.0 | 3.96e-01 | 73.0% | 85.6% |
| 4650209 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.63 | 43.0 | 3.81e-01 | 71.4% | 81.1% |
| 4024657 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.63 | 51.0 | 2.98e-01 | 96.8% | 9.6% |
| 4562079 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.63 | 43.0 | 3.52e-01 | 73.0% | 52.8% |
| 5044629 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 43.0 | 3.56e-01 | 77.8% | 66.1% |
| 4039616 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 43.0 | 3.17e-01 | 76.2% | 68.1% |
| 4954476 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 41.0 | 3.20e-01 | 74.6% | 40.0% |
| 5066347 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 38.0 | 2.92e-01 | 71.4% | 88.7% |
| 3943749 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 47.0 | 3.22e-01 | 100.0% | 65.9% |
| 4995140 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.55 | 39.0 | 3.02e-01 | 74.6% | 97.9% |
| 3781112 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.55 | 39.0 | 2.31e-01 | 74.6% | 30.7% |
| 5008809 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 39.0 | 2.36e-01 | 77.8% | 26.8% |
| 4454324 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.53 | 37.0 | 3.21e-01 | 73.0% | 55.0% |
| 4934385 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.53 | 37.0 | 2.69e-01 | 74.6% | 70.0% |
| 4551803 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.52 | 36.0 | 3.30e-01 | 73.0% | 64.7% |
| 4149109 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.51 | 35.0 | 3.28e-01 | 73.0% | 67.1% |
| 3175055 | 304.48.1.37 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 | 0.51 | 35.0 | 2.40e-01 | 73.0% | 61.5% |
| 3985978 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 37.0 | 3.38e-01 | 79.4% | 90.0% |
| 3416069 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 38.0 | 3.73e-01 | 82.5% | 82.9% |
| 4088180 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.50 | 39.0 | 3.61e-01 | 87.3% | 77.6% |