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IMGVR_UViG_3300002182_000326-3300002182-JGI24721J26819_100053538

Arc-Vir

IMGVR_UViG_3300002182_000326-3300002182-JGI24721J26819_100053538

Quality

88.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-120
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.78 41.0 4.41e-01 74.0% 60.7%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 39.0 5.13e-01 79.8% 96.4%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.71 52.0 4.69e-01 100.0% 57.2%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.69 53.0 5.55e-01 94.2% 89.4%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.66 47.0 4.32e-01 97.1% 57.1%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.63 46.0 4.55e-01 77.9% 99.1%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 39.0 4.34e-01 89.4% 82.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.62 42.0 4.66e-01 83.7% 93.6%
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 49.0 4.72e-01 84.6% 96.6%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 49.0 4.69e-01 84.6% 96.6%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.60 44.0 4.09e-01 77.9% 92.4%
2gkmA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 4.45e-01 86.5% 91.3%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.59 49.0 4.38e-01 92.3% 98.0%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 41.0 4.63e-01 96.2% 100.0%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.87e-01 100.0% 91.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 34.0 3.71e-01 82.7% 71.8%
7ocsB01 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 41.0 3.50e-01 80.8% 46.2%
2wzkA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.56 40.0 3.80e-01 75.0% 92.1%
1zklA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.56 50.0 3.56e-01 100.0% 64.4%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 41.0 4.40e-01 99.0% 95.2%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 40.0 3.99e-01 77.9% 87.5%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.55 37.0 3.97e-01 100.0% 83.7%
2fji102 1.10.357.70 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain 0.54 40.0 3.31e-01 77.9% 53.2%
1tt5B02 1.10.10.520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 0.54 38.0 4.30e-01 92.3% 100.0%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.54 35.0 3.92e-01 74.0% 86.1%
2c0uA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 38.0 3.26e-01 72.1% 91.7%
3f6tA02 1.10.20.110 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.54 41.0 3.69e-01 80.8% 70.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.54 39.0 3.81e-01 76.9% 88.0%
4kjmB01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 29.0 3.42e-01 71.2% 81.0%
2jifA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 37.0 3.29e-01 72.1% 64.3%
2bnxB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 37.0 2.81e-01 71.2% 62.9%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 39.0 3.87e-01 77.9% 88.1%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 41.0 3.34e-01 100.0% 44.1%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.51 34.0 3.42e-01 73.1% 65.1%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 36.0 3.43e-01 74.0% 68.0%
4zi3D00 1.20.1520.10 Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain 0.51 38.0 3.65e-01 81.7% 77.3%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.51 41.0 3.45e-01 88.5% 87.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4173849 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 62.0 6.05e-01 97.1% 75.5%
4452388 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.77 36.0 5.14e-01 73.1% 94.0%
3952621 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.72 42.0 5.09e-01 80.8% 88.4%
4028766 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.72 41.0 4.36e-01 73.1% 64.4%
3530124 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 38.0 4.30e-01 76.9% 68.8%
3436690 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.68 40.0 4.28e-01 73.1% 66.7%
4028408 7111.1.1.1 alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap 0.66 46.0 3.62e-01 75.0% 34.5%
4115617 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.65 48.0 4.30e-01 100.0% 55.2%
3587004 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.65 48.0 4.24e-01 100.0% 53.7%
3504717 106.1.1.8 alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.64 51.0 4.59e-01 86.5% 86.9%
1318717 3896.1.1.1 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CTP_transf_1 0.64 47.0 3.50e-01 100.0% 30.1%
4193935 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.61 36.0 3.91e-01 70.2% 70.6%
3562670 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.60 46.0 3.40e-01 80.8% 38.4%
4290271 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.60 37.0 3.89e-01 72.1% 68.9%
3957298 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.59 36.0 3.84e-01 73.1% 68.9%
4321884 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.59 36.0 3.80e-01 74.0% 66.7%
4288099 106.1.1.3 alpha arrays › Globin-like › Globin-like › Globin-like › Bac_globin 0.58 49.0 4.59e-01 93.3% 93.0%
3259602 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 44.0 4.53e-01 100.0% 84.0%
4095914 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.58 34.0 3.79e-01 70.2% 75.0%
4063100 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.57 35.0 3.86e-01 70.2% 77.5%
4474310 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.57 36.0 3.99e-01 73.1% 81.2%
4270503 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.57 35.0 3.82e-01 71.2% 74.1%
5062324 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.56 45.0 3.70e-01 88.5% 68.0%
1412473 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.56 50.0 4.00e-01 100.0% 58.3%
4949593 3718.1.1.0 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.56 39.0 4.12e-01 91.3% 80.0%
3177237 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.53 46.0 4.14e-01 96.2% 73.1%
4828003 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.53 39.0 3.76e-01 77.9% 85.1%
4352659 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.52 46.0 3.94e-01 100.0% 72.6%
4430705 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.52 47.0 3.96e-01 100.0% 69.8%
4023330 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.52 38.0 3.21e-01 76.0% 87.4%
3715311 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.52 45.0 3.54e-01 100.0% 77.9%
2968203 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 48.0 3.84e-01 100.0% 83.2%
4447311 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.52 38.0 3.22e-01 77.9% 93.9%
3510098 5069.1.1.7 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.51 37.0 3.14e-01 75.0% 89.7%
4142143 109.4.1.170 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N 0.51 41.0 2.46e-01 89.4% 17.8%
4546517 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 47.0 4.07e-01 100.0% 83.2%
D2 high residues 145-381
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.83 58.0 6.69e-01 94.5% 93.9%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 47.0 5.56e-01 77.2% 78.8%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 52.0 6.40e-01 94.1% 96.9%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 51.0 6.01e-01 77.2% 91.9%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.74 51.0 6.01e-01 84.8% 97.1%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 53.0 5.59e-01 77.2% 89.6%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.68 60.0 5.81e-01 91.1% 84.0%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.63 26.0 4.06e-01 90.7% 96.7%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 17.0 2.94e-01 81.4% 76.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 53.0 6.29e-01 77.2% 81.8%
4992939 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 62.0 7.39e-01 87.3% 98.2%
5073434 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 70.0 7.65e-01 92.8% 97.0%
4954527 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 72.0 7.49e-01 94.9% 91.4%
4954640 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 69.0 7.52e-01 92.4% 97.0%
5061203 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 54.0 6.02e-01 77.6% 81.6%
4997941 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 67.0 7.14e-01 92.4% 93.8%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 52.0 5.92e-01 77.2% 82.1%
5058518 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 61.0 6.79e-01 92.8% 94.4%
4998614 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 68.0 7.30e-01 92.4% 98.1%
5031467 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.79 62.0 6.75e-01 93.2% 95.0%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 54.0 6.37e-01 77.2% 94.9%
3946063 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 60.0 6.60e-01 97.0% 96.4%
5012504 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.76 55.0 6.25e-01 93.7% 96.1%
5008693 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 64.0 6.81e-01 96.6% 98.6%
4928769 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 67.0 6.82e-01 94.5% 96.1%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 52.0 6.01e-01 89.5% 95.6%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 53.0 6.09e-01 90.3% 97.2%
4964439 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 55.0 5.82e-01 77.6% 85.6%
4965640 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 63.0 6.40e-01 92.8% 93.9%
5078379 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 57.0 6.25e-01 86.5% 99.0%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 48.0 5.38e-01 77.2% 88.4%
3891447 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.62 47.0 5.03e-01 77.2% 95.1%
4964800 101.1.2.925 alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.50 24.0 3.46e-01 95.8% 98.1%