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IMGVR_UViG_3300002219_000010-3300002219-SCADCLC_1000083239
Arc-VirIMGVR_UViG_3300002219_000010-3300002219-SCADCLC_1000083239
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-159
Domain cluster:
rep: NC_053010.1__YP_009999927.1__JT352_gp62__00062__D84-203
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f6gA02 | 3.30.160.340 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 32.0 | 4.38e-01 | 93.1% | 100.0% |
| 3irbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 30.0 | 3.97e-01 | 85.5% | 92.6% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 29.0 | 4.05e-01 | 84.0% | 96.9% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 26.0 | 3.39e-01 | 81.7% | 73.3% |
| 1vqqA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.57 | 34.0 | 3.66e-01 | 88.5% | 68.8% |
| 1lyvA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 40.0 | 3.13e-01 | 77.9% | 84.5% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.54 | 29.0 | 3.40e-01 | 88.5% | 75.9% |
| 4jhmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 35.0 | 3.68e-01 | 93.1% | 75.2% |
| 1ae2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 32.0 | 3.77e-01 | 84.0% | 94.2% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 29.0 | 3.13e-01 | 89.3% | 62.8% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 30.0 | 3.21e-01 | 90.1% | 66.4% |
| 3jvaA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 33.0 | 3.49e-01 | 93.1% | 74.6% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 32.0 | 3.65e-01 | 98.5% | 90.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3354564 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 29.0 | 4.23e-01 | 73.3% | 100.0% |
| 5009492 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.60 | 31.0 | 3.48e-01 | 84.0% | 61.5% |
| 4838879 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.57 | 30.0 | 3.80e-01 | 86.3% | 83.7% |
| 3955464 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 32.0 | 3.78e-01 | 94.7% | 78.9% |
| 3991433 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 41.0 | 3.82e-01 | 99.2% | 59.1% |
| 3279764 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 31.0 | 4.02e-01 | 93.9% | 97.1% |
| 3289386 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 31.0 | 3.66e-01 | 86.3% | 78.4% |
| 5007239 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.56 | 34.0 | 3.69e-01 | 80.9% | 70.9% |
| 3957483 | 243.1.1.77 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 | 0.55 | 32.0 | 3.21e-01 | 81.7% | 55.6% |
| 5023892 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.55 | 38.0 | 3.87e-01 | 93.9% | 72.1% |
| 4542063 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.54 | 38.0 | 3.88e-01 | 96.2% | 74.4% |
| 3466381 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 39.0 | 4.21e-01 | 100.0% | 90.9% |
| 3291641 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 32.0 | 3.65e-01 | 86.3% | 81.1% |
| 3406575 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.53 | 41.0 | 2.91e-01 | 80.9% | 64.4% |
| 4887510 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.53 | 30.0 | 3.57e-01 | 88.5% | 84.5% |
| 4237498 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.53 | 36.0 | 3.71e-01 | 94.7% | 72.8% |
| 3405067 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.52 | 40.0 | 2.89e-01 | 81.7% | 63.8% |
| 3407706 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.52 | 40.0 | 2.85e-01 | 81.7% | 63.3% |
| 3767654 | 2484.1.1.176 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 | 0.51 | 46.0 | 3.20e-01 | 100.0% | 80.7% |
| 3250428 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 36.0 | 3.52e-01 | 71.0% | 66.9% |
| 3350068 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.51 | 42.0 | 3.94e-01 | 88.5% | 89.7% |
| 4939185 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 39.0 | 4.06e-01 | 98.5% | 87.5% |
| 4586017 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.50 | 32.0 | 3.44e-01 | 92.4% | 73.0% |