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IMGVR_UViG_3300002219_000010-3300002219-SCADCLC_1000083290
Arc-VirIMGVR_UViG_3300002219_000010-3300002219-SCADCLC_1000083290
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-234
Domain cluster:
rep: BK010646.1__DAC76694.1__X__00016__D28-50_111-212
D2
medium
residues 12-61
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gx0B04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.76 | 47.0 | 3.39e-01 | 90.0% | 22.9% |
| 3aekA03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.73 | 43.0 | 3.23e-01 | 90.0% | 24.4% |
| 4n40A02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.72 | 44.0 | 3.65e-01 | 92.0% | 34.4% |
| 2couA01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.68 | 43.0 | 3.57e-01 | 94.0% | 34.8% |
| 4bmdA02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.67 | 44.0 | 3.53e-01 | 98.0% | 34.3% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.67 | 37.0 | 3.18e-01 | 76.0% | 33.3% |
| 3m20A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.67 | 49.0 | 4.69e-01 | 90.0% | 67.8% |
| 3lrtA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 46.0 | 3.41e-01 | 100.0% | 28.0% |
| 2c4kA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 48.0 | 3.37e-01 | 100.0% | 24.6% |
| 1y8qB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 41.0 | 2.72e-01 | 100.0% | 14.9% |
| 1r94A00 | 2.60.300.12 | Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain | 0.64 | 34.0 | 2.70e-01 | 74.0% | 24.7% |
| 2nteB01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.62 | 39.0 | 3.15e-01 | 100.0% | 30.3% |
| 2qtfA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 47.0 | 3.34e-01 | 100.0% | 26.3% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.59 | 46.0 | 2.78e-01 | 90.0% | 14.4% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 43.0 | 3.43e-01 | 82.0% | 83.7% |
| 6r9rA01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.57 | 46.0 | 3.10e-01 | 92.0% | 87.8% |
| 2nteA02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.55 | 38.0 | 3.03e-01 | 98.0% | 34.6% |
| 2iuwA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.55 | 38.0 | 2.64e-01 | 76.0% | 28.8% |
| 3qo6A03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 33.0 | 2.67e-01 | 96.0% | 28.4% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 36.0 | 3.22e-01 | 90.0% | 43.0% |
| 1cl8A00 | 3.40.580.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A | 0.54 | 44.0 | 2.92e-01 | 100.0% | 54.0% |
| 2o18A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.54 | 38.0 | 2.44e-01 | 80.0% | 38.8% |
| 6l2cB00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 43.0 | 2.64e-01 | 100.0% | 85.7% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 37.0 | 2.90e-01 | 100.0% | 31.5% |
| 7x0fA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 44.0 | 3.24e-01 | 98.0% | 93.9% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.52 | 41.0 | 2.63e-01 | 90.0% | 74.6% |
| 1dekA02 | 1.10.238.70 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.52 | 41.0 | 3.17e-01 | 90.0% | 86.1% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 38.0 | 3.19e-01 | 100.0% | 42.3% |
| 2lfvA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.51 | 37.0 | 2.82e-01 | 86.0% | 35.8% |
| 4as2A02 | 1.20.1440.310 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 41.0 | 3.37e-01 | 96.0% | 74.8% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 36.0 | 3.08e-01 | 76.0% | 72.5% |
| 1fm0E00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.50 | 40.0 | 2.95e-01 | 90.0% | 90.8% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.50 | 42.0 | 3.18e-01 | 100.0% | 53.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3882804 | 263.1.1.4 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT | 0.74 | 35.0 | 3.20e-01 | 74.0% | 35.9% |
| 3993677 | 823.1.1.0 ↗ | a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW | 0.73 | 37.0 | 3.27e-01 | 76.0% | 32.9% |
| 4942038 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.68 | 51.0 | 3.65e-01 | 100.0% | 27.3% |
| 4957628 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.68 | 49.0 | 3.54e-01 | 100.0% | 26.7% |
| 4932902 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.67 | 46.0 | 3.42e-01 | 100.0% | 27.4% |
| 4501109 | 7573.1.1.9 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran, Pribosyl_synth | 0.66 | 46.0 | 3.27e-01 | 100.0% | 23.9% |
| 5082770 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.66 | 46.0 | 3.19e-01 | 76.0% | 22.8% |
| 3518988 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.65 | 41.0 | 3.49e-01 | 100.0% | 35.6% |
| 3657220 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.63 | 42.0 | 2.44e-01 | 70.0% | 33.9% |
| 3466238 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.62 | 42.0 | 2.48e-01 | 72.0% | 17.3% |
| 3387301 | 2003.1.7.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig | 0.61 | 43.0 | 2.97e-01 | 76.0% | 85.0% |
| 3509076 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.61 | 42.0 | 2.53e-01 | 100.0% | 9.9% |
| 5038176 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.61 | 46.0 | 3.97e-01 | 100.0% | 52.6% |
| 3693638 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.60 | 42.0 | 3.14e-01 | 74.0% | 34.1% |
| 4952922 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.59 | 41.0 | 2.70e-01 | 76.0% | 16.7% |
| 3588223 | 304.156.1.0 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain | 0.59 | 40.0 | 3.47e-01 | 74.0% | 42.2% |
| 5082051 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 33.0 | 2.72e-01 | 74.0% | 31.1% |
| 4466130 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.58 | 44.0 | 3.09e-01 | 84.0% | 85.7% |
| 5055279 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.58 | 50.0 | 3.35e-01 | 100.0% | 81.0% |
| 4257661 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.58 | 47.0 | 4.00e-01 | 96.0% | 75.6% |
| 3187959 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.58 | 51.0 | 3.23e-01 | 100.0% | 44.3% |
| 3271509 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 44.0 | 2.93e-01 | 86.0% | 70.5% |
| 4884047 | 2003.1.9.10 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_FCCH | 0.57 | 35.0 | 2.56e-01 | 90.0% | 19.0% |
| 3719051 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.57 | 45.0 | 2.90e-01 | 98.0% | 82.7% |
| 3169604 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.56 | 44.0 | 2.85e-01 | 86.0% | 45.7% |
| 3358979 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.55 | 46.0 | 3.17e-01 | 100.0% | 25.8% |
| 3777525 | 2004.1.1.230 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like | 0.55 | 46.0 | 3.16e-01 | 100.0% | 33.8% |
| 4152182 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.54 | 38.0 | 3.25e-01 | 100.0% | 42.1% |
| 3965667 | 109.4.1.520 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N | 0.53 | 42.0 | 2.49e-01 | 88.0% | 12.3% |
| 4995435 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.53 | 42.0 | 2.96e-01 | 90.0% | 54.1% |
| 3700850 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.14e-01 | 82.0% | 91.4% |
| 4268622 | 3398.1.1.2 ↗ | a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › prok_STING | 0.53 | 44.0 | 3.14e-01 | 100.0% | 86.7% |
| 3736321 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.52 | 45.0 | 2.99e-01 | 100.0% | 26.5% |
| 3250420 | 109.4.1.339 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC-Trs85 | 0.52 | 45.0 | 2.72e-01 | 100.0% | 15.1% |
| 5045709 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 40.0 | 2.90e-01 | 86.0% | 77.9% |
| 3371853 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.52 | 39.0 | 2.69e-01 | 88.0% | 49.5% |
| 5028806 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 44.0 | 2.78e-01 | 96.0% | 77.3% |
| 3768826 | 7573.1.1.3 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyl_synth | 0.51 | 35.0 | 2.44e-01 | 72.0% | 60.6% |
| 3272269 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 42.0 | 2.86e-01 | 100.0% | 33.6% |
| 4956652 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.51 | 42.0 | 3.50e-01 | 100.0% | 50.5% |
| 3299789 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.51 | 34.0 | 2.59e-01 | 72.0% | 87.3% |
| 3698880 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.51 | 42.0 | 2.68e-01 | 100.0% | 27.9% |
| 3651717 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.51 | 42.0 | 2.74e-01 | 100.0% | 20.0% |
| 4044734 | 6076.1.1.1 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › UBA_E1_SCCH | 0.50 | 34.0 | 2.43e-01 | 76.0% | 23.4% |
| 3786266 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.50 | 42.0 | 2.92e-01 | 100.0% | 44.9% |