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IMGVR_UViG_3300002219_000508-3300002219-SCADCLC_1001259834
Arc-VirIMGVR_UViG_3300002219_000508-3300002219-SCADCLC_1001259834
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7b1cD01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.58 | 40.0 | 3.70e-01 | 75.8% | 93.2% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 34.0 | 2.86e-01 | 88.7% | 30.9% |
| 1vwxT01 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.53 | 40.0 | 3.45e-01 | 80.6% | 74.2% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 36.0 | 2.94e-01 | 82.3% | 39.3% |
| 3kvnA02 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.52 | 36.0 | 2.40e-01 | 75.8% | 90.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3251044 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.69 | 39.0 | 2.90e-01 | 72.6% | 21.4% |
| 3503534 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.62 | 34.0 | 2.58e-01 | 74.2% | 21.4% |
| 4187457 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.59 | 33.0 | 2.57e-01 | 80.6% | 24.6% |
| 3621431 | 385.1.1.2 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta | 0.57 | 39.0 | 3.31e-01 | 93.5% | 41.9% |
| 4635290 | 4967.1.1.25 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N | 0.55 | 45.0 | 2.70e-01 | 88.7% | 50.7% |
| 3855702 | 385.1.1.2 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta | 0.54 | 40.0 | 3.39e-01 | 80.6% | 95.2% |
| 2756655 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.54 | 45.0 | 3.43e-01 | 98.4% | 70.2% |
| 4944896 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.53 | 38.0 | 3.00e-01 | 75.8% | 98.4% |
| 3562501 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.53 | 36.0 | 3.34e-01 | 71.0% | 55.0% |
| 4493480 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.52 | 38.0 | 3.28e-01 | 80.6% | 92.3% |
| 4493293 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 37.0 | 3.19e-01 | 80.6% | 88.2% |
| 4575287 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 37.0 | 3.16e-01 | 82.3% | 85.8% |