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IMGVR_UViG_3300002223_000616-3300002223-C687J26845_100043222

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300002223_000616-3300002223-C687J26845_100043222 ↗
Kingdom:: archaea

Quality

72.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 216-266

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vovA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.75	65.0	4.65e-01	100.0%	35.1%
3v5uA02	1.20.1420.30	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region	0.74	56.0	3.58e-01	98.0%	18.6%
4ijaA03	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.73	64.0	4.59e-01	100.0%	34.7%
1uf9A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	55.0	3.83e-01	100.0%	27.7%
2af6A02	6.10.140.450	Special › Helix non-globular › Helix Hairpins ›	0.65	45.0	4.29e-01	74.5%	71.0%
5wp3B00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.65	58.0	4.57e-01	100.0%	53.9%
2isyA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	56.0	4.03e-01	100.0%	60.9%
6j7xA01	1.25.40.120	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase	0.62	50.0	3.20e-01	94.1%	28.4%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.60	43.0	3.56e-01	76.5%	75.5%
1x9bA00	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.57	39.0	3.91e-01	72.5%	88.7%
3ip4C01	1.10.20.60	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain	0.57	38.0	4.07e-01	100.0%	84.1%
2cxiA03	3.30.56.10	Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 ›	0.53	37.0	3.47e-01	78.4%	58.6%
3nrkA01	1.10.4030.10	Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain	0.53	47.0	3.12e-01	100.0%	25.2%
1vw4L02	1.10.246.170	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.51	43.0	3.57e-01	90.2%	68.2%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3776655	148.1.3.11 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MT	0.74	62.0	4.30e-01	94.1%	73.3%
1175743	2484.1.1.8 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK	0.73	63.0	4.27e-01	100.0%	26.4%
3867913	2003.1.9.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF	0.69	45.0	2.70e-01	94.1%	10.0%
3410485	226.1.1.1 ↗	a+b two layers › POZ domain › POZ domain › POZ domain › BTB	0.67	50.0	3.66e-01	86.3%	31.5%
5065724	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.64	54.0	3.63e-01	100.0%	24.5%
5054485	5055.1.1.0 ↗	extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel	0.61	50.0	4.43e-01	96.1%	86.3%
3648149	109.4.1.1292 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3	0.61	41.0	2.51e-01	70.6%	27.9%
4949205	2005.1.1.1 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1	0.57	50.0	3.23e-01	98.0%	22.5%
5083341	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.56	49.0	3.24e-01	100.0%	23.6%
3662896	101.1.1.411 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2	0.55	41.0	3.36e-01	100.0%	38.4%
3804193	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.54	46.0	2.93e-01	94.1%	21.4%
4452096	142.1.1.1 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2	0.54	50.0	3.29e-01	100.0%	49.2%
4570445	610.3.1.1 ↗	alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey	0.53	44.0	3.11e-01	100.0%	47.2%

D2 medium residues 42-179

PDB

Domain cluster: representative

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3580274	5050.1.1.5 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Folate_carrier	0.66	39.0	3.79e-01	73.2%	52.7%
5046916	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.63	55.0	4.13e-01	98.6%	39.7%
5083294	1075.4.1.119 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › CyanoTRADDas_TM	0.62	45.0	3.89e-01	73.9%	48.8%