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IMGVR_UViG_3300002407_000045-3300002407-C687J29651_100005367

Arc-Vir

IMGVR_UViG_3300002407_000045-3300002407-C687J29651_100005367

Quality

86.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-234
PDB
D2 high residues 297-490
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17289.9 best Terminase_6C 30.7 4.20e-07 86.1% 97.4%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.77 69.0 6.87e-01 100.0% 90.4%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.75 67.0 6.81e-01 99.5% 95.2%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.75 64.0 6.72e-01 100.0% 98.3%
3n4pC00 3.30.420.320 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › DNA-packaging terminase, C-terminal nuclease domain 0.73 70.0 6.70e-01 100.0% 96.3%
2qi2A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.71 40.0 5.12e-01 89.7% 93.0%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.70 49.0 5.75e-01 89.2% 100.0%
2o8bB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.69 53.0 5.46e-01 89.7% 83.9%
2re2A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.66 37.0 4.58e-01 89.7% 87.3%
1j0aA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 32.0 4.18e-01 95.9% 83.7%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 50.0 5.41e-01 89.2% 96.2%
3gdwB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.59 37.0 4.27e-01 90.2% 87.0%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 37.0 4.17e-01 74.7% 81.6%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 24.0 3.35e-01 85.6% 77.8%
1v4vA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 33.0 3.70e-01 77.8% 70.7%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.57 31.0 4.08e-01 97.4% 95.4%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 31.0 4.00e-01 95.9% 93.8%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 31.0 3.90e-01 97.4% 93.8%
3vnaA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 37.0 4.19e-01 89.7% 91.2%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 24.0 3.19e-01 87.6% 74.8%
2r7aB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 32.0 3.87e-01 90.2% 91.8%
1bquA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 23.0 3.07e-01 87.6% 73.0%
2z6iA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 42.0 3.61e-01 84.0% 85.4%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 46.0 4.31e-01 93.8% 95.1%
4g4sP00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.52 41.0 4.16e-01 80.9% 93.7%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 36.0 4.01e-01 79.9% 91.3%
4g0mA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 35.0 4.09e-01 89.7% 99.3%
1z90B01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 46.0 3.79e-01 100.0% 73.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975080 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.94 81.0 8.29e-01 100.0% 91.9%
4972935 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.93 80.0 8.31e-01 100.0% 94.4%
4974990 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.88 74.0 7.81e-01 100.0% 96.0%
3964372 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.86 73.0 7.37e-01 100.0% 87.2%
4929631 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 70.0 7.32e-01 100.0% 93.3%
3944867 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 80.0 7.68e-01 100.0% 96.7%
5083931 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.81 69.0 7.28e-01 100.0% 97.7%
2125479 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 68.0 6.82e-01 100.0% 90.3%
4974213 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.77 68.0 6.80e-01 91.2% 99.0%
2877581 2484.1.1.95 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like 0.75 72.0 6.39e-01 100.0% 87.3%
4954544 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.75 68.0 6.88e-01 99.5% 96.8%
5031052 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 70.0 6.89e-01 99.5% 96.1%
4988089 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.73 67.0 6.80e-01 99.5% 97.4%
5041440 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 69.0 6.76e-01 100.0% 97.1%
4615831 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.72 47.0 5.08e-01 90.2% 77.0%
4536448 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 40.0 5.03e-01 90.7% 91.7%
4529580 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.67 53.0 5.82e-01 89.7% 98.8%
4543638 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.67 52.0 5.59e-01 88.7% 93.3%
4202129 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.67 53.0 5.77e-01 89.7% 98.8%
4240117 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.65 51.0 5.44e-01 89.7% 90.8%
4162427 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.65 50.0 5.49e-01 88.7% 96.2%
4292358 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.65 51.0 5.47e-01 90.2% 94.5%
5022447 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 40.0 4.91e-01 86.1% 96.8%
3953212 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.64 42.0 5.03e-01 88.1% 95.6%
3893078 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.64 46.0 4.36e-01 73.2% 96.9%
3598526 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.63 49.0 4.38e-01 79.4% 96.5%
4995262 2484.1.1.80 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C 0.63 39.0 4.58e-01 90.7% 90.0%
4296237 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.62 48.0 5.27e-01 89.2% 99.4%
4966168 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 46.0 3.82e-01 77.8% 92.2%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 46.0 3.70e-01 77.8% 91.8%
3263845 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 50.0 3.60e-01 86.1% 52.7%
3388170 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 34.0 4.13e-01 88.1% 88.3%
4438376 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 34.0 4.23e-01 75.8% 90.8%
3408695 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.58 25.0 3.53e-01 89.2% 81.1%
5053278 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.58 44.0 3.57e-01 78.4% 77.8%
4377534 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 35.0 4.18e-01 81.4% 88.5%
3838712 2484.1.1.245 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA 0.58 49.0 3.78e-01 90.2% 97.1%
3239066 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.57 46.0 3.54e-01 83.5% 58.1%
3742593 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.57 23.0 3.30e-01 89.7% 78.9%
3364681 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 48.0 3.66e-01 88.7% 98.4%
3357725 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 46.0 3.52e-01 84.0% 99.8%
3335943 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 47.0 3.44e-01 87.1% 94.2%
3343696 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 3.53e-01 84.0% 100.0%
3612383 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.56 43.0 3.41e-01 78.9% 87.8%
3434427 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 3.32e-01 82.0% 95.9%
3669778 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 46.0 3.49e-01 85.1% 99.8%
3376135 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.55 48.0 3.68e-01 91.2% 99.8%
3467280 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 48.0 3.48e-01 93.3% 93.1%
3804501 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 4.22e-01 89.2% 100.0%
4383357 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 37.0 4.32e-01 84.5% 95.0%
3430854 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.55 43.0 3.40e-01 82.5% 100.0%
3376912 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 47.0 3.58e-01 90.2% 99.5%
4443623 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.54 46.0 4.05e-01 89.2% 95.0%
3983395 2484.1.1.136 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL 0.54 45.0 3.78e-01 88.7% 97.0%
3439529 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 43.0 4.67e-01 95.9% 98.2%
3312424 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.54 45.0 3.55e-01 89.2% 99.7%
11167 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.53 44.0 3.41e-01 87.6% 96.8%
3649875 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 45.0 3.90e-01 87.6% 87.0%
3296792 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 47.0 3.75e-01 92.3% 99.7%
3823072 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 48.0 3.53e-01 99.5% 96.0%
3362671 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 3.36e-01 81.4% 90.9%
3214642 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.51 44.0 3.42e-01 91.2% 95.7%
3589041 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 26.0 3.10e-01 98.5% 70.8%
3241023 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 45.0 3.37e-01 96.4% 98.2%
3306835 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.50 44.0 3.57e-01 93.3% 98.9%
4612956 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.50 42.0 3.47e-01 89.7% 99.7%
D3 medium residues 1-65
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh0A02 6.10.250.360 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 41.0 4.24e-01 100.0% 62.9%