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IMGVR_UViG_3300002446_000788-3300002446-NAPDCCLC_1000708910
Arc-VirIMGVR_UViG_3300002446_000788-3300002446-NAPDCCLC_1000708910
Identity
- Kingdom:
- archaea
Quality
62.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-57
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.77 | 44.0 | 3.21e-01 | 100.0% | 21.9% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.76 | 43.0 | 3.90e-01 | 100.0% | 42.7% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.68 | 42.0 | 2.78e-01 | 96.5% | 15.0% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 40.0 | 2.43e-01 | 100.0% | 8.9% |
| 3hvnA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.64 | 46.0 | 4.74e-01 | 100.0% | 83.0% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.63 | 42.0 | 3.12e-01 | 100.0% | 26.5% |
| 3b42A00 | 3.30.450.290 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.63 | 48.0 | 3.72e-01 | 100.0% | 37.3% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 41.0 | 3.34e-01 | 98.2% | 34.9% |
| 3d4eA02 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.62 | 41.0 | 3.72e-01 | 100.0% | 50.0% |
| 3t1oA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 41.0 | 2.94e-01 | 100.0% | 21.4% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.60 | 47.0 | 3.99e-01 | 100.0% | 52.7% |
| 6sulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 53.0 | 4.22e-01 | 96.5% | 68.5% |
| 2qmqA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 52.0 | 3.35e-01 | 100.0% | 69.4% |
| 4pswA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 45.0 | 3.49e-01 | 100.0% | 36.1% |
| 7zubC01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 48.0 | 3.86e-01 | 100.0% | 91.6% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.58 | 41.0 | 3.55e-01 | 98.2% | 48.3% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.56 | 48.0 | 3.74e-01 | 100.0% | 69.6% |
| 1rieA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 49.0 | 3.80e-01 | 100.0% | 77.2% |
| 7bwcA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 44.0 | 2.78e-01 | 100.0% | 15.8% |
| 1j26A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 49.0 | 4.29e-01 | 100.0% | 73.6% |
| 2w3sA04 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 45.0 | 3.68e-01 | 94.7% | 96.5% |
| 2jbwA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 49.0 | 3.16e-01 | 100.0% | 26.6% |
| 2ifaB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 44.0 | 3.22e-01 | 100.0% | 38.8% |
| 4ympA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 3.73e-01 | 100.0% | 49.1% |
| 4feuF01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 47.0 | 4.33e-01 | 96.5% | 83.6% |
| 3fxzA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 48.0 | 3.97e-01 | 98.2% | 66.3% |
| 2y3cA00 | 3.90.1580.10 | Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) | 0.54 | 42.0 | 2.88e-01 | 98.2% | 95.0% |
| 4f0jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 47.0 | 2.97e-01 | 100.0% | 23.1% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 47.0 | 2.98e-01 | 100.0% | 21.2% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 46.0 | 3.99e-01 | 98.2% | 77.0% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 2.95e-01 | 100.0% | 27.5% |
| 3a7fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 45.0 | 3.85e-01 | 98.2% | 71.0% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 46.0 | 3.11e-01 | 100.0% | 31.6% |
| 6tpiB01 | 3.30.70.3040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.58e-01 | 100.0% | 63.2% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3245667 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.78 | 64.0 | 4.92e-01 | 100.0% | 40.0% |
| 4316388 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.71 | 53.0 | 3.86e-01 | 82.5% | 30.0% |
| 4960484 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.69 | 61.0 | 4.62e-01 | 100.0% | 42.2% |
| 3598409 | 244.1.1.40 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › BCS1_N | 0.68 | 50.0 | 3.99e-01 | 100.0% | 39.1% |
| 3262417 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 40.0 | 4.82e-01 | 96.5% | 100.0% |
| 4292124 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.65 | 55.0 | 3.90e-01 | 100.0% | 44.2% |
| 3695375 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.65 | 55.0 | 3.99e-01 | 100.0% | 45.7% |
| 4389729 | 213.1.1.2 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N | 0.64 | 54.0 | 3.90e-01 | 100.0% | 37.8% |
| 5016948 | 876.1.1.7 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR | 0.63 | 52.0 | 3.91e-01 | 100.0% | 87.5% |
| 4162562 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.62 | 53.0 | 3.73e-01 | 100.0% | 32.3% |
| 5080912 | 876.1.1.9 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DndB | 0.62 | 52.0 | 4.12e-01 | 100.0% | 91.4% |
| 3740184 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.60 | 50.0 | 3.85e-01 | 100.0% | 45.5% |
| 5014022 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.58 | 49.0 | 3.44e-01 | 100.0% | 29.5% |
| 3941459 | 876.1.1.7 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR | 0.58 | 47.0 | 3.65e-01 | 100.0% | 83.9% |
| 3377568 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.58 | 41.0 | 3.57e-01 | 94.7% | 49.4% |
| 4261250 | 213.1.1.2 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N | 0.58 | 47.0 | 3.41e-01 | 96.5% | 33.7% |
| 3220519 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.58 | 49.0 | 3.68e-01 | 100.0% | 39.4% |
| 3411864 | 11.1.5.110 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GD_N | 0.58 | 51.0 | 4.13e-01 | 98.2% | 66.1% |
| 3587367 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 49.0 | 3.63e-01 | 100.0% | 39.4% |
| 3616222 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.57 | 47.0 | 3.31e-01 | 96.5% | 69.0% |
| 3385704 | 7579.1.1.92 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 | 0.57 | 49.0 | 3.29e-01 | 100.0% | 68.2% |
| 3838184 | 212.1.1.12 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 | 0.57 | 50.0 | 3.91e-01 | 100.0% | 72.0% |
| 3998296 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 50.0 | 4.34e-01 | 100.0% | 64.4% |
| 3944178 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 50.0 | 4.03e-01 | 100.0% | 77.4% |
| 4851919 | 1003.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR_Cas9_WED | 0.57 | 46.0 | 3.84e-01 | 98.2% | 85.5% |
| 3385533 | 212.1.1.12 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 | 0.57 | 49.0 | 3.86e-01 | 100.0% | 72.8% |
| 4629040 | 327.11.2.24 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_12 | 0.57 | 48.0 | 4.01e-01 | 98.2% | 74.3% |
| 5058449 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.56 | 50.0 | 3.98e-01 | 100.0% | 61.7% |
| 3598878 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 49.0 | 3.53e-01 | 100.0% | 79.9% |
| 5003677 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 41.0 | 3.93e-01 | 100.0% | 70.0% |
| 4954535 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.55 | 49.0 | 4.14e-01 | 100.0% | 67.4% |
| 4986894 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.55 | 46.0 | 4.60e-01 | 98.2% | 88.3% |
| 4059572 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.55 | 49.0 | 3.94e-01 | 100.0% | 59.1% |
| 3696292 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.55 | 47.0 | 2.92e-01 | 100.0% | 21.4% |
| 5021670 | 11.1.1.1422 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7406 | 0.54 | 48.0 | 3.60e-01 | 100.0% | 43.6% |
| 4080330 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.54 | 48.0 | 3.98e-01 | 100.0% | 65.0% |
| 5044367 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.53 | 47.0 | 4.12e-01 | 94.7% | 77.5% |
| 3775073 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 48.0 | 3.06e-01 | 98.2% | 26.9% |
| 3178364 | 319.1.1.19 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 | 0.53 | 47.0 | 3.87e-01 | 100.0% | 100.0% |
| 4205746 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.53 | 45.0 | 3.79e-01 | 100.0% | 63.8% |
| 4009025 | 304.4.1.21 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD | 0.53 | 43.0 | 3.70e-01 | 100.0% | 60.0% |
| 3726634 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 45.0 | 4.09e-01 | 98.2% | 75.0% |
| 4142447 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.52 | 47.0 | 3.86e-01 | 100.0% | 65.0% |
| 4854014 | 5014.1.1.0 ↗ | extended segments › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor | 0.52 | 43.0 | 4.13e-01 | 100.0% | 80.0% |
| 3948181 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.51 | 46.0 | 4.25e-01 | 100.0% | 77.0% |
| 3833178 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 46.0 | 4.09e-01 | 100.0% | 75.0% |
| 4971398 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 44.0 | 3.60e-01 | 100.0% | 63.6% |
| 3595740 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.51 | 44.0 | 3.01e-01 | 98.2% | 30.0% |
| 5030026 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.50 | 44.0 | 3.84e-01 | 100.0% | 70.0% |
| 3845942 | 9.13.1.7 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Pep_M12B_propep | 0.50 | 42.0 | 3.53e-01 | 100.0% | 72.5% |
| 3653904 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 43.0 | 3.88e-01 | 98.2% | 73.8% |