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IMGVR_UViG_3300002460_002035-3300002460-C687J35021_100093449
Arc-VirIMGVR_UViG_3300002460_002035-3300002460-C687J35021_100093449
Identity
- Kingdom:
- archaea
Quality
76.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-81
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 46.0 | 4.86e-01 | 77.8% | 71.9% |
| 3ejjB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.68 | 51.0 | 4.02e-01 | 84.1% | 62.1% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.64 | 45.0 | 4.54e-01 | 74.6% | 73.4% |
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.62 | 44.0 | 2.80e-01 | 76.2% | 41.2% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.62 | 46.0 | 3.41e-01 | 79.4% | 68.4% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 52.0 | 4.43e-01 | 100.0% | 90.3% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.61 | 44.0 | 4.14e-01 | 77.8% | 63.2% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 52.0 | 3.79e-01 | 100.0% | 85.3% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 51.0 | 4.29e-01 | 100.0% | 87.9% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 51.0 | 4.32e-01 | 100.0% | 82.1% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.60 | 41.0 | 4.45e-01 | 87.3% | 86.8% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.59 | 40.0 | 4.54e-01 | 74.6% | 100.0% |
| 1rjgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 48.0 | 3.23e-01 | 95.2% | 21.3% |
| 6nplA01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.59 | 45.0 | 2.74e-01 | 85.7% | 63.2% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.59 | 47.0 | 3.47e-01 | 92.1% | 80.7% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.57 | 42.0 | 4.27e-01 | 77.8% | 83.3% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.57 | 43.0 | 3.89e-01 | 82.5% | 96.6% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 48.0 | 4.10e-01 | 100.0% | 84.8% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 48.0 | 3.17e-01 | 98.4% | 37.8% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.57 | 36.0 | 3.70e-01 | 100.0% | 66.7% |
| 4od4A01 | 1.10.357.140 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase | 0.56 | 47.0 | 3.65e-01 | 100.0% | 94.9% |
| 4p53A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.56 | 42.0 | 3.04e-01 | 82.5% | 51.8% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.56 | 40.0 | 3.84e-01 | 77.8% | 69.7% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 46.0 | 3.97e-01 | 100.0% | 86.8% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.54 | 46.0 | 3.33e-01 | 98.4% | 62.6% |
| 1s9qA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 44.0 | 3.06e-01 | 96.8% | 78.6% |
| 1z5zA02 | 1.20.120.850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain | 0.52 | 41.0 | 3.89e-01 | 85.7% | 88.2% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.52 | 45.0 | 3.89e-01 | 96.8% | 85.7% |
| 2yv9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 42.0 | 3.43e-01 | 96.8% | 57.5% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 43.0 | 3.41e-01 | 100.0% | 43.8% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.03e-01 | 95.2% | 49.2% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 42.0 | 3.09e-01 | 98.4% | 98.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4095038 | 109.4.1.1360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p | 0.73 | 63.0 | 3.69e-01 | 100.0% | 17.5% |
| 3531310 | 109.4.1.574 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p | 0.72 | 62.0 | 4.28e-01 | 100.0% | 43.0% |
| 4025109 | 130.1.1.6 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 | 0.66 | 46.0 | 4.52e-01 | 74.6% | 80.0% |
| 4464477 | 109.4.1.2406 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29901, PF29903, PF29904 | 0.63 | 56.0 | 3.07e-01 | 98.4% | 15.5% |
| 4160364 | 109.4.1.2406 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29901, PF29903, PF29904 | 0.63 | 54.0 | 3.01e-01 | 100.0% | 12.9% |
| 1924272 | 109.4.1.23 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › B56 | 0.61 | 53.0 | 3.41e-01 | 100.0% | 41.4% |
| 5027469 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.61 | 50.0 | 3.00e-01 | 92.1% | 20.8% |
| 4993195 | 632.6.1.15 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119 | 0.59 | 43.0 | 3.79e-01 | 77.8% | 57.9% |
| 3681226 | 3336.1.1.1 ↗ | alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE | 0.59 | 49.0 | 3.22e-01 | 100.0% | 33.2% |
| 3703384 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 3.31e-01 | 100.0% | 29.4% |
| None | — | 0.58 | 48.0 | 3.27e-01 | 98.4% | 55.9% | |
| 3445960 | 141.1.1.26 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › OPT | 0.57 | 50.0 | 3.14e-01 | 98.4% | 89.0% |
| 3722584 | 109.4.1.1552 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28736 | 0.56 | 48.0 | 3.57e-01 | 100.0% | 45.0% |
| 4079732 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.55 | 47.0 | 3.55e-01 | 100.0% | 69.1% |
| 4181721 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 47.0 | 3.85e-01 | 100.0% | 99.2% |
| 4361709 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.54 | 45.0 | 3.51e-01 | 98.4% | 82.5% |
| 3980912 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.54 | 45.0 | 3.80e-01 | 96.8% | 90.4% |
| 3929695 | 3340.1.1.0 ↗ | extended segments › Helical region in REST corepressor 1 › Helical region in REST corepressor 1 › Helical region in REST corepressor 1 | 0.53 | 36.0 | 3.71e-01 | 90.5% | 73.3% |
| 3336158 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.53 | 44.0 | 3.40e-01 | 95.2% | 69.6% |
| 3742023 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.51 | 42.0 | 2.99e-01 | 96.8% | 57.7% |