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IMGVR_UViG_3300002481_000002-3300002481-JGI24020J35080_100032758

Arc-Vir

IMGVR_UViG_3300002481_000002-3300002481-JGI24020J35080_100032758

Identity

Kingdom:
archaea

Quality

67.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-74
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.73 49.0 4.39e-01 92.5% 49.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 51.0 4.66e-01 98.1% 56.5%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 58.0 3.55e-01 92.5% 29.8%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 57.0 3.42e-01 90.6% 20.2%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 58.0 3.53e-01 92.5% 27.0%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.69 48.0 3.71e-01 77.4% 33.1%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.68 53.0 4.09e-01 86.8% 62.1%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.68 48.0 4.02e-01 90.6% 44.3%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 56.0 3.45e-01 90.6% 26.8%
4hdjA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 55.0 3.31e-01 90.6% 29.3%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 55.0 3.41e-01 92.5% 27.5%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 51.0 4.55e-01 86.8% 66.3%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 54.0 3.35e-01 90.6% 32.7%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 52.0 4.66e-01 86.8% 97.3%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 55.0 3.42e-01 92.5% 34.5%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.65 55.0 3.79e-01 98.1% 42.2%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.65 55.0 3.98e-01 100.0% 36.0%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 55.0 4.02e-01 100.0% 66.0%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 52.0 3.23e-01 94.3% 24.1%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 47.0 3.93e-01 84.9% 74.8%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 54.0 4.86e-01 96.2% 80.0%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.64 42.0 3.68e-01 90.6% 43.9%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.64 42.0 3.55e-01 100.0% 38.9%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 47.0 4.93e-01 88.7% 91.5%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 52.0 3.67e-01 94.3% 34.1%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.62 47.0 4.24e-01 88.7% 81.5%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 2.96e-01 81.1% 51.8%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 43.0 3.93e-01 75.5% 54.8%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.60 48.0 4.57e-01 96.2% 76.9%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 42.0 3.98e-01 100.0% 60.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 3.83e-01 90.6% 84.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.34e-01 86.8% 84.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.57 46.0 3.49e-01 92.5% 61.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 3.85e-01 79.2% 83.8%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.57 39.0 2.34e-01 73.6% 29.6%
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.56 39.0 3.39e-01 73.6% 58.5%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 45.0 4.46e-01 96.2% 86.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 40.0 4.18e-01 81.1% 89.6%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 43.0 3.43e-01 94.3% 83.2%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.54 47.0 3.64e-01 100.0% 60.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.90e-01 86.8% 75.8%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 2.97e-01 75.5% 70.7%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.54 42.0 3.73e-01 88.7% 79.3%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.53 34.0 3.57e-01 100.0% 76.1%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.68e-01 90.6% 62.2%
5ngyA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.52 42.0 3.45e-01 98.1% 48.1%
8ajjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 3.24e-01 90.6% 76.3%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 33.0 3.17e-01 86.8% 53.2%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 44.0 2.78e-01 100.0% 35.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.81e-01 90.6% 78.3%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 2.61e-01 88.7% 44.5%
2g7cB01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.50 35.0 3.28e-01 71.7% 74.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517217 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 62.0 3.70e-01 90.6% 28.0%
3866609 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.72 60.0 3.60e-01 90.6% 28.7%
3716765 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.72 60.0 3.37e-01 90.6% 26.7%
4281581 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.72 59.0 3.47e-01 90.6% 26.0%
3416102 5.1.4.344 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_SCAP 0.71 60.0 3.59e-01 94.3% 25.2%
3382432 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.71 59.0 3.61e-01 92.5% 33.9%
4027205 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.71 58.0 3.52e-01 90.6% 29.7%
3408075 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 57.0 3.53e-01 90.6% 33.7%
3263885 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.70 58.0 3.48e-01 90.6% 27.0%
3526377 3939.1.1.240 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › WD40 0.70 59.0 3.48e-01 92.5% 24.4%
3788239 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 50.0 3.12e-01 98.1% 13.6%
3681619 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 58.0 3.67e-01 92.5% 43.7%
3510260 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 59.0 3.68e-01 92.5% 33.6%
3926960 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.70 59.0 3.62e-01 92.5% 35.4%
3250651 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 58.0 3.52e-01 92.5% 23.3%
3250930 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.69 59.0 3.58e-01 94.3% 23.8%
3930593 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 59.0 3.60e-01 94.3% 24.7%
3578843 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.69 57.0 3.59e-01 92.5% 38.2%
3538071 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.68 58.0 3.47e-01 94.3% 21.4%
3560257 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.68 57.0 3.43e-01 92.5% 27.6%
3595178 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 57.0 3.20e-01 94.3% 11.2%
3553012 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.68 56.0 3.44e-01 92.5% 22.4%
4943457 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 58.0 3.63e-01 94.3% 26.9%
5025174 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.68 55.0 5.06e-01 92.5% 82.9%
3615177 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 57.0 3.46e-01 92.5% 29.1%
4049822 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.68 56.0 3.29e-01 92.5% 28.1%
3936499 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 57.0 3.15e-01 94.3% 10.6%
4304229 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.67 57.0 3.40e-01 94.3% 17.4%
2739307 5.1.5.77 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR75_1st 0.67 55.0 4.69e-01 92.5% 93.1%
3775858 5.1.4.547 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF4800, NBCH_WD40 0.67 56.0 3.32e-01 94.3% 23.0%
3530256 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.66 55.0 3.33e-01 94.3% 24.2%
3823160 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.66 53.0 3.31e-01 92.5% 40.7%
5034935 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.66 55.0 5.03e-01 94.3% 82.9%
4562940 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.66 54.0 3.31e-01 94.3% 21.7%
3240635 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 54.0 3.06e-01 92.5% 12.1%
3918990 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 52.0 2.88e-01 90.6% 10.9%
3485655 5.1.4.528 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT80_2nd 0.65 55.0 3.30e-01 94.3% 19.7%
3806989 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.63 52.0 3.30e-01 94.3% 23.2%
3951704 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.63 50.0 4.61e-01 88.7% 90.0%
3582026 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.62 46.0 4.01e-01 79.2% 95.0%
3293107 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.61 48.0 3.78e-01 90.6% 80.8%
6441 243.6.1.8 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.60 48.0 4.55e-01 96.2% 75.8%
4287737 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.59 49.0 3.07e-01 96.2% 34.4%
3265885 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.58 46.0 3.62e-01 100.0% 86.4%
5022798 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 51.0 2.97e-01 100.0% 10.8%
3678390 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.58 46.0 3.79e-01 98.1% 71.3%
3647467 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.57 45.0 3.73e-01 98.1% 71.3%
3987218 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.54 38.0 2.69e-01 73.6% 29.1%
3590632 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 36.0 3.59e-01 96.2% 67.3%
3936316 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.53 35.0 3.50e-01 73.6% 67.3%
3623811 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 42.0 3.55e-01 88.7% 75.6%
3792870 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.52 35.0 3.13e-01 71.7% 46.3%
3224319 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.52 35.0 3.25e-01 71.7% 54.3%
369186 702.1.1.9 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1, Choline_bind_2, Choline_bind_3 0.51 35.0 3.07e-01 71.7% 56.6%